Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BMQ_RS24840 Genome accession   NC_014019
Coordinates   4942153..4942515 (-) Length   120 a.a.
NCBI ID   WP_013059785.1    Uniprot ID   -
Organism   Priestia megaterium QM B1551     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4937641..4950069 4942153..4942515 within 0


Gene organization within MGE regions


Location: 4937641..4950069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMQ_RS24830 (BMQ_5132) - 4937641..4940271 (+) 2631 WP_013059783.1 DEAD/DEAH box helicase -
  BMQ_RS24835 (BMQ_5133) - 4940569..4941615 (+) 1047 WP_013059784.1 LysM peptidoglycan-binding domain-containing protein -
  BMQ_RS24840 (BMQ_5134) ssbB 4942153..4942515 (-) 363 WP_013059785.1 single-stranded DNA-binding protein Machinery gene
  BMQ_RS24845 (BMQ_5135) - 4942612..4943049 (+) 438 WP_013059786.1 YwpF family protein -
  BMQ_RS24855 (BMQ_5136) - 4943573..4943995 (+) 423 WP_013059787.1 helix-turn-helix domain-containing protein -
  BMQ_RS24860 (BMQ_5137) fabZ 4944024..4944458 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BMQ_RS24865 (BMQ_5138) - 4944542..4945363 (-) 822 WP_013059789.1 flagellar hook-basal body protein -
  BMQ_RS24870 (BMQ_5139) - 4945387..4946211 (-) 825 WP_013059790.1 flagellar hook-basal body protein -
  BMQ_RS24875 (BMQ_5140) - 4946326..4947327 (-) 1002 WP_013059791.1 rod shape-determining protein -
  BMQ_RS24880 (BMQ_5141) spoIIID 4947515..4947778 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  BMQ_RS24885 (BMQ_5142) - 4948054..4948884 (-) 831 WP_013059793.1 M23 family metallopeptidase -
  BMQ_RS24890 (BMQ_5143) spoIID 4949047..4950069 (-) 1023 WP_013059794.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13486.22 Da        Isoelectric Point: 7.1647

>NTDB_id=36926 BMQ_RS24840 WP_013059785.1 4942153..4942515(-) (ssbB) [Priestia megaterium QM B1551]
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=36926 BMQ_RS24840 WP_013059785.1 4942153..4942515(-) (ssbB) [Priestia megaterium QM B1551]
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAAAGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

88.333

0.458
  ssbB/cilA Streptococcus mitis NCTC 12261

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.509

88.333

0.367

Multiple sequence alignment