Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ECI140_RS01440 | Genome accession | NZ_CP041062 |
| Coordinates | 304817..305344 (+) | Length | 175 a.a. |
| NCBI ID | WP_014168221.1 | Uniprot ID | - |
| Organism | Enterobacter ludwigii strain I140 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 299817..310344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECI140_RS01420 (ECI140_01420) | aphA | 300140..300853 (+) | 714 | WP_014168217.1 | acid phosphatase AphA | - |
| ECI140_RS01425 (ECI140_01425) | - | 300967..301383 (+) | 417 | WP_014168218.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ECI140_RS01430 (ECI140_01430) | - | 301386..301739 (+) | 354 | WP_014168219.1 | MmcQ/YjbR family DNA-binding protein | - |
| ECI140_RS01435 (ECI140_01435) | uvrA | 301743..304565 (-) | 2823 | WP_014168220.1 | excinuclease ABC subunit UvrA | - |
| ECI140_RS01440 (ECI140_01440) | ssb | 304817..305344 (+) | 528 | WP_014168221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ECI140_RS01445 (ECI140_01445) | - | 305408..305689 (-) | 282 | WP_020882839.1 | YjcB family protein | - |
| ECI140_RS01450 (ECI140_01450) | - | 306179..307579 (+) | 1401 | WP_050737727.1 | sensor domain-containing diguanylate cyclase | - |
| ECI140_RS01455 (ECI140_01455) | - | 307919..309484 (+) | 1566 | WP_025206387.1 | EAL domain-containing protein | - |
| ECI140_RS01460 (ECI140_01460) | soxS | 309491..309817 (-) | 327 | WP_013095071.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18735.76 Da Isoelectric Point: 5.2456
>NTDB_id=369203 ECI140_RS01440 WP_014168221.1 304817..305344(+) (ssb) [Enterobacter ludwigii strain I140]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=369203 ECI140_RS01440 WP_014168221.1 304817..305344(+) (ssb) [Enterobacter ludwigii strain I140]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.783 |
| ssb | Glaesserella parasuis strain SC1401 |
56.757 |
100 |
0.6 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.474 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35 |
100 |
0.36 |