Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FIV34_RS01630 Genome accession   NZ_CP041046
Coordinates   353555..355054 (+) Length   499 a.a.
NCBI ID   WP_139979022.1    Uniprot ID   A0A4Y5YYV8
Organism   Luteibacter pinisoli strain MAH-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 348555..360054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV34_RS01595 (FIV34_01595) - 348683..349384 (+) 702 WP_246058723.1 YdcF family protein -
  FIV34_RS01600 (FIV34_01600) hemF 349475..350377 (+) 903 WP_139979011.1 oxygen-dependent coproporphyrinogen oxidase -
  FIV34_RS01605 (FIV34_01605) - 350381..351031 (-) 651 WP_139979013.1 hypothetical protein -
  FIV34_RS01610 (FIV34_01610) gpmA 351180..351920 (+) 741 WP_139979015.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  FIV34_RS01615 (FIV34_01615) - 352042..352593 (+) 552 WP_246058724.1 DUF1453 domain-containing protein -
  FIV34_RS01620 (FIV34_01620) glnK 352600..352938 (-) 339 WP_139979017.1 P-II family nitrogen regulator -
  FIV34_RS01625 (FIV34_01625) - 353118..353372 (+) 255 WP_139979019.1 accessory factor UbiK family protein -
  FIV34_RS01630 (FIV34_01630) comM 353555..355054 (+) 1500 WP_139979022.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FIV34_RS01635 (FIV34_01635) - 355143..356087 (+) 945 WP_139979024.1 alpha/beta hydrolase -
  FIV34_RS01640 (FIV34_01640) - 356231..356812 (-) 582 WP_139979026.1 DUF6338 family protein -
  FIV34_RS01645 (FIV34_01645) - 357131..358918 (+) 1788 WP_139979028.1 sodium:proton antiporter -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53535.26 Da        Isoelectric Point: 6.9072

>NTDB_id=369155 FIV34_RS01630 WP_139979022.1 353555..355054(+) (comM) [Luteibacter pinisoli strain MAH-14]
MSLAVTLSRAQEGVAAPQVVVEVHLSGGLPSTSIVGLPDSAVREARDRVRVAIQNTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRPVPGILPALIRARRCGRRIVVPRANAAEAALIGESDILLADSL
AEVCAWLSGQGELGTPTAPDIDDLLTGMPDMRDMRGQHQARRALEITAAGGHHLLLMGPPGTGKTMLAERLAGILPAMTE
SEALESSAIRSLAGEVVDPAAWRRRPFRAPHHTASGAALVGGGSSPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPLE
SGQIVISRAARQSTFPAEFQLVAAMNPCPCGYLGDPLHECRCTPDQVARYKGKISGPLFDRIDLCVEVPRVSITELSANR
GPNDDDSATVRKRVVRAREKALLRAGQPNAALSVVNLERDCALRSAERDWLQAALDKLGASARAYHRILRVARTIADLEG
GTGCVEQSHLAEAMHYRRF

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=369155 FIV34_RS01630 WP_139979022.1 353555..355054(+) (comM) [Luteibacter pinisoli strain MAH-14]
ATGAGCCTCGCCGTCACTCTTTCGCGCGCGCAGGAAGGTGTCGCCGCGCCGCAAGTCGTCGTCGAGGTCCACCTGTCCGG
TGGCCTGCCTTCCACGTCCATCGTTGGCCTGCCTGATTCGGCGGTACGCGAGGCGCGCGACCGCGTCCGCGTCGCCATCC
AGAACACCGCCTTTGAATACCCCAACCGCCGCGTTACGGTGAACCTGGCGCCTGCCGAGCTGCCCAAAGACGGCGGCCGG
TTCGACCTGGCCATCGCGCTGGGTATCCTTGCCGCCGGCTCCCAGGTGCCGCGTGAGCGCCTGGACGATTGCGAGTTCCT
TGGCGAGCTGGCCCTTTCCGGCGAGCTGCGTCCCGTGCCCGGCATCCTGCCTGCGCTGATTCGCGCCCGCCGCTGTGGCC
GCCGGATCGTCGTGCCGCGGGCGAACGCCGCCGAGGCCGCGCTGATTGGCGAAAGTGACATCCTGCTGGCCGACAGCCTG
GCCGAGGTCTGCGCGTGGCTGAGCGGGCAGGGCGAGCTGGGTACGCCCACGGCGCCCGATATCGACGACCTGCTTACCGG
CATGCCAGACATGCGCGACATGCGCGGCCAGCACCAGGCGCGGCGGGCTCTGGAAATAACGGCGGCGGGTGGGCACCACC
TGCTGCTCATGGGACCGCCCGGCACCGGCAAAACCATGCTGGCAGAGCGCCTCGCCGGCATCCTGCCTGCGATGACCGAG
TCCGAAGCGCTGGAAAGCTCCGCGATCCGCTCGCTGGCCGGGGAAGTGGTCGATCCTGCAGCCTGGCGCCGCCGCCCGTT
CCGGGCGCCGCACCACACGGCCTCAGGCGCCGCGCTGGTGGGCGGCGGATCGTCTCCGCGCCCTGGGGAAATCTCGCTGG
CACACAATGGCGTGCTGTTCCTCGACGAGCTGCCCGAATTCAGCCGGCACGTACTCGAGGTGCTGCGCGAGCCCCTGGAA
TCCGGCCAGATCGTGATTTCCCGTGCGGCCCGGCAGTCCACCTTCCCGGCGGAGTTCCAGCTGGTGGCGGCGATGAACCC
CTGCCCGTGCGGCTACCTGGGTGATCCGCTCCACGAATGCCGCTGCACCCCCGACCAGGTGGCCCGCTACAAGGGAAAGA
TTTCTGGCCCGCTCTTCGACCGCATCGATCTGTGTGTCGAAGTGCCGCGCGTGTCGATCACCGAACTCTCGGCCAACCGG
GGCCCGAACGACGACGACAGTGCCACCGTGCGCAAGCGCGTGGTGCGCGCTCGTGAAAAGGCGCTGCTGCGCGCAGGCCA
GCCAAACGCGGCACTCAGCGTGGTGAATCTCGAACGCGATTGCGCGCTGCGCTCCGCCGAGCGGGACTGGCTGCAAGCCG
CGCTGGACAAACTGGGCGCGTCGGCACGCGCCTATCATCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTCGAAGGC
GGCACCGGCTGCGTGGAGCAGTCGCACCTCGCCGAAGCGATGCATTACCGCCGGTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y5YYV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.016

99.8

0.539
  comM Vibrio campbellii strain DS40M4

53.32

99.599

0.531
  comM Haemophilus influenzae Rd KW20

52.183

100

0.527
  comM Glaesserella parasuis strain SC1401

51.093

100

0.515
  comM Legionella pneumophila str. Paris

51.303

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.303

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.574

99.8

0.435

Multiple sequence alignment