Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GZH78_RS20160 Genome accession   NZ_CP048408
Coordinates   4516474..4517142 (-) Length   222 a.a.
NCBI ID   WP_011335105.1    Uniprot ID   A0ABM5ZL40
Organism   Pseudomonas fluorescens strain DR397     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4511474..4522142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS20150 (GZH78_20155) - 4512801..4514948 (+) 2148 WP_085667474.1 methyl-accepting chemotaxis protein -
  GZH78_RS20155 (GZH78_20160) - 4515164..4516477 (-) 1314 WP_163975939.1 sensor histidine kinase -
  GZH78_RS20160 (GZH78_20165) ciaR 4516474..4517142 (-) 669 WP_011335105.1 response regulator transcription factor Regulator
  GZH78_RS20165 (GZH78_20170) - 4517146..4517457 (-) 312 WP_039770259.1 PepSY domain-containing protein -
  GZH78_RS20170 (GZH78_20175) - 4517457..4517765 (-) 309 WP_039770261.1 PepSY domain-containing protein -
  GZH78_RS20175 (GZH78_20180) - 4517912..4518991 (+) 1080 WP_163975941.1 patatin-like phospholipase family protein -
  GZH78_RS20180 (GZH78_20185) queD 4519078..4519434 (+) 357 WP_163975943.1 6-carboxytetrahydropterin synthase QueD -
  GZH78_RS20185 (GZH78_20190) - 4519520..4520332 (+) 813 WP_163975944.1 alpha/beta hydrolase -
  GZH78_RS20190 (GZH78_20195) codB 4520506..4521777 (+) 1272 WP_011335109.1 cytosine permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24795.26 Da        Isoelectric Point: 6.0851

>NTDB_id=368606 GZH78_RS20160 WP_011335105.1 4516474..4517142(-) (ciaR) [Pseudomonas fluorescens strain DR397]
MRLLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLPGVPGLEVLAQWRAGGLTIPVLILTA
RDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSKGQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLR
YFMLHPEQILSKSHLAEHLYDGETERDSNVLEVHVNHLRRKLGKSVIETRRGQGYLFGGQAS

Nucleotide


Download         Length: 669 bp        

>NTDB_id=368606 GZH78_RS20160 WP_011335105.1 4516474..4517142(-) (ciaR) [Pseudomonas fluorescens strain DR397]
ATGCGCTTGCTTCTGGTGGAAGACCACGTACCGCTGGCTGACGAATTGCTCGCCGGCCTGCAACGCCAAGGCTACGCGGT
GGACTGGCTGGCGGACGGGCGCGATGCGGTCTATCAGGGCAGCAGCGAGCCTTATGACCTGATCGTCCTCGACCTCGGTC
TGCCCGGCGTGCCGGGGCTTGAGGTGTTGGCGCAATGGCGCGCCGGCGGTCTGACGATTCCGGTGCTGATCCTTACCGCC
CGCGATTCCTGGGCCGAGCGCATTGAAGGCCTGAAGGCCGGTGCCGACGATTACCTGACCAAACCTTTCCATCCGGAAGA
ACTGTATTTGCGCATCCAGTCGCTGCTGCGCCGCTCCAAGGGCCAGGCCAACCAGCCGACGCTCAAGGCCGCCGGTCTGC
ACCTGGACGAGGGCCGCCAGTGTGTCGTGCGCGACGGCGCCGATATTCAGCTGACCGCTGCCGAATTCCGTCTGCTGCGC
TACTTCATGCTGCACCCGGAACAGATTCTCTCCAAAAGCCACCTCGCCGAACACCTCTACGACGGCGAGACCGAGCGCGA
TTCCAACGTGCTGGAGGTTCACGTCAATCACCTGCGACGCAAGCTCGGCAAGAGCGTGATCGAAACCCGTCGCGGTCAGG
GTTATCTGTTTGGCGGACAGGCTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae R6

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae Rx1

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae D39

37.727

99.099

0.374
  ciaR Streptococcus mutans UA159

37.727

99.099

0.374
  ciaR Streptococcus pneumoniae TIGR4

37.727

99.099

0.374
  covR Streptococcus salivarius strain HSISS4

36.161

100

0.365
  micA Streptococcus pneumoniae Cp1015

34.615

100

0.365

Multiple sequence alignment