Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   GZH78_RS26655 Genome accession   NZ_CP048408
Coordinates   5928306..5931140 (+) Length   944 a.a.
NCBI ID   WP_115079381.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5923306..5936140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS26630 (GZH78_26640) - 5923817..5924242 (+) 426 WP_074691674.1 DUF350 domain-containing protein -
  GZH78_RS26635 (GZH78_26645) - 5924260..5924952 (+) 693 WP_163976601.1 DUF1190 domain-containing protein -
  GZH78_RS26640 (GZH78_26650) - 5924955..5926112 (+) 1158 WP_163976603.1 glutathionylspermidine synthase family protein -
  GZH78_RS26645 (GZH78_26655) ssb 5926189..5926707 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  GZH78_RS26650 (GZH78_26660) - 5926717..5928114 (-) 1398 WP_039771979.1 MFS transporter -
  GZH78_RS26655 (GZH78_26665) uvrA 5928306..5931140 (+) 2835 WP_115079381.1 excinuclease ABC subunit UvrA Machinery gene
  GZH78_RS26660 (GZH78_26670) bfr 5931206..5931673 (-) 468 WP_064382244.1 bacterioferritin -
  GZH78_RS26665 (GZH78_26675) - 5931823..5933277 (-) 1455 WP_039771983.1 catalase -
  GZH78_RS26670 (GZH78_26680) rplQ 5933516..5933902 (-) 387 WP_007955635.1 50S ribosomal protein L17 -
  GZH78_RS26675 (GZH78_26685) rpoA 5933945..5934946 (-) 1002 WP_003186012.1 DNA-directed RNA polymerase subunit alpha -
  GZH78_RS26680 (GZH78_26690) rpsD 5934973..5935593 (-) 621 WP_011336168.1 30S ribosomal protein S4 -
  GZH78_RS26685 (GZH78_26695) rpsK 5935612..5936001 (-) 390 WP_002555466.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104334.22 Da        Isoelectric Point: 6.9551

>NTDB_id=368636 GZH78_RS26655 WP_115079381.1 5928306..5931140(+) (uvrA) [Pseudomonas fluorescens strain DR397]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKG
EHLSVFEELRAQGFVRARVNGRLCELDELPKLDKQKKHTIEVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGELTLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEQPFNELPADQQKYILHGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACDYFGALKMTGRRGEIADKILKEIRERLQFLVNVGLDYLSLD
RSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGQIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKQVLSLKGARGNNLRNVDLEIPIGLLTCVTGV
SGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLLIRDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=368636 GZH78_RS26655 WP_115079381.1 5928306..5931140(+) (uvrA) [Pseudomonas fluorescens strain DR397]
TTGGACAAGATCCTGATTCGTGGGGCCCGCACCCACAACCTGAAGAACATCGACCTGACCCTGCCACGGGACAAACTGAT
CGTCATCACCGGCCTGTCCGGATCCGGCAAGTCTTCCCTGGCTTTCGACACGCTGTACGCCGAAGGTCAGCGCCGCTATG
TCGAATCCCTGTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAAAAACCCGACGTCGACACCATCGAAGGCCTGTCG
CCGGCGATCTCCATCGAACAGAAGTCGACCTCGCACAACCCGCGTTCCACGGTCGGCACCATCACCGAAATCTACGACTA
CCTGCGTCTGCTCTATGCCCGCGTCGGTACGCCACGCTGCCCGGATCACGACATTCCGCTGGAAGCGCAGACTGTAAGCC
AGATGGTCGATCTGGTACTCGCCCAGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATTCGCGAGCGCAAGGGC
GAGCATTTGTCGGTGTTCGAAGAACTGCGCGCCCAGGGCTTCGTCCGGGCCCGGGTCAACGGCCGGCTCTGCGAGCTGGA
TGAACTGCCGAAACTTGATAAACAGAAGAAGCACACGATTGAAGTCGTGGTCGACCGCTTCAAGGTTCGCGCGGATCTGC
AGCAGCGTCTGGCGGAATCCTTCGAGACCGCGCTGAAGCTGGCGGACGGCATCGCGCTGGTGGCGCCGATGGATGACGAG
CCGGGCGAAGAGATGATCTTCTCCGCGCGCTTCGCCTGCCCGATCTGCGGCCATGCGATCAGCGAGCTGGAACCCAAGCT
GTTTTCCTTCAACAACCCGGCCGGCGCCTGCCCGACCTGCGACGGTCTGGGCGTGAAGCAGTTCTTCGACATCAAGCGAC
TGGTCAACGGTGAACTCACGCTGGCCGAGGGCGCTATTCGTGGCTGGGATCGGCGCAACGTCTATTACTTCCAGATGCTC
GGCTCGCTGGCCGCGCATTACGGCTTCAGCCTGGAGCAGCCGTTCAACGAGCTGCCGGCCGACCAGCAGAAGTACATCCT
GCACGGCAGCGGCTCGCAGAATGTCGATTTCAAATACCTCAATGACCGGGGCGACATCGTCAAGCGCTCGCACCCGTTCG
AGGGCATCGTGCCGAACCTTGAGCGCCGCTACCGCGAAACCGAATCGGCGAGCGTGCGTGAAGAGCTGGCGAAGTTCCTC
AGCACCCAGTCGTGCCCGGATTGCCGTGGCACCCGCCTGCGTCGCGAAGCGCGGCACGTGTGGGTCGGCGAGAAAACCCT
GCCGGCGGTGACCAACCTGCCGATCGGCGACGCCTGCGATTACTTCGGCGCGCTGAAGATGACCGGCCGCCGCGGCGAGA
TCGCCGACAAGATTCTCAAGGAAATTCGCGAGCGCCTGCAGTTTCTGGTCAACGTCGGCCTGGACTATCTGTCGCTGGAT
CGCAGTGCCGATACGTTGTCTGGCGGCGAGGCGCAGCGGATTCGTCTGGCCAGTCAGATCGGCGCGGGCCTGGTGGGTGT
TCTGTACATCCTCGATGAGCCGTCGATTGGTCTGCACCAGCGCGACAACGATCGGCTGCTCGGCACCCTCAAGCACCTGC
GCGACATCGGCAACACGGTGATTGTGGTCGAGCACGACGAAGATGCGATTCGACTGGCCGACTACGTAGTGGATATCGGC
CCGGGCGCCGGTGTTCATGGCGGGCAGATCGTCGCCGAAGGCACACCGGACGAAGTCATGGCGCACCCGGATTCGTTGAC
CGGTAAATACCTGTCGGGCCGGGTCAAGATCGAAGTGCCGGCCAAGCGCACGCCACGCAACAAGAAGCAGGTGCTGTCGC
TCAAGGGCGCGCGGGGCAACAACCTGCGCAACGTTGACCTGGAAATCCCGATCGGCCTGCTGACCTGCGTGACCGGCGTC
TCCGGCTCCGGCAAATCGACGCTGATCAACAACACGCTGTTCCCGCTGAGCGCCACGGCACTCAATGGCGCGACCACCCT
GGAAGCGGCAGCCCACGACAGCATCAAGGGCCTGGAACATCTGGACAAGGTCGTCGACATCGACCAGAGCCCGATCGGTC
GCACGCCGCGCTCCAACCCGGCGACCTACACCGGCCTGTTCACGCCGATTCGCGAACTGTTCGCCGGCGTGCCCGAGTCC
CGCTCCCGTGGTTACGGGCCGGGGCGTTTCTCGTTCAACGTCAAGGGCGGGCGTTGCGAGGCCTGTCAGGGCGACGGTCT
GATCAAGGTGGAAATGCATTTCCTGCCGGACATCTACGTTCCGTGTGACGTGTGCAAGAGCAAGCGCTACAACCGCGAAA
CCCTGGAGATCAAATACAAGGGCAAGAGCATCCACGAAACCCTCGAGATGACTATCGAGGAAGCGCGGGAGTTCTTCGAC
GCGGTGCCGGCGCTGGCGCGCAAACTGCAAACGCTGATGGATGTGGGCCTGTCGTACATCAAGCTCGGGCAGTCGGCCAC
GACGCTGTCGGGTGGTGAGGCCCAGCGGGTCAAGTTGTCCCGCGAACTGTCCAAGCGCGATACCGGCAAAACCCTGTACA
TCCTGGATGAGCCGACCACCGGTCTACACTTCGCGGATATCCAGCAACTGCTCGACGTACTGCATCGCCTGCGCGACCAC
GGCAACACAGTGGTGGTGATCGAGCACAACCTCGACGTAATCAAGACGGCCGACTGGCTGGTGGATCTTGGCCCCGAGGG
TGGTTCGAAAGGTGGCCAGATCATCGCCACCGGTACGCCGGAGGAAGTGGCCGAGATGAAGCAATCTCACACCGGTCACT
ATCTCAAGCCGCTGTTGATTCGCGATCGGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae TIGR4

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae D39

57.766

99.576

0.575

Multiple sequence alignment