Detailed information NTG0368569

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FIU12_RS10970
• Genome accession: NZ_CP040993
• Coordinates: 2211386..2212186 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain FDAARGOS_775
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2206386..2217186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU12_RS10950 (FIU12_10950)	dksA	2206966..2207421 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
FIU12_RS10955 (FIU12_10955)	sfsA	2207584..2208300 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FIU12_RS10960 (FIU12_10960)	thpR	2208300..2208836 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
FIU12_RS10965 (FIU12_10965)	hrpB	2208909..2211338 (+)	2430	WP_004147115.1	ATP-dependent helicase HrpB	-
FIU12_RS10970 (FIU12_10970)	pilD	2211386..2212186 (-)	801	WP_004145898.1	prepilin peptidase	Machinery gene
FIU12_RS10975 (FIU12_10975)	-	2212183..2212929 (-)	747	WP_004145897.1	type II secretion system protein N	-
FIU12_RS10980 (FIU12_10980)	-	2212919..2213404 (-)	486	WP_004151943.1	type II secretion system protein M	-
FIU12_RS10985 (FIU12_10985)	gspL	2213397..2214590 (-)	1194	WP_025862279.1	type II secretion system protein GspL	-
FIU12_RS10990 (FIU12_10990)	gspK	2214577..2215563 (-)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
FIU12_RS10995 (FIU12_10995)	gspJ	2215560..2216156 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
FIU12_RS11000 (FIU12_11000)	gspI	2216153..2216518 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
FIU12_RS11005 (FIU12_11005)	gspH	2216521..2217030 (-)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=368569 FIU12_RS10970 WP_004145898.1 2211386..2212186(-) (pilD) [Klebsiella pneumoniae strain FDAARGOS_775]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=368569 FIU12_RS10970 WP_004145898.1 2211386..2212186(-) (pilD) [Klebsiella pneumoniae strain FDAARGOS_775]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425