Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FIU11_RS04430 | Genome accession | NZ_CP040990 |
| Coordinates | 830764..831297 (+) | Length | 177 a.a. |
| NCBI ID | WP_004724084.1 | Uniprot ID | - |
| Organism | Vibrio furnissii strain FDAARGOS_777 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 825764..836297
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU11_RS04415 (FIU11_04415) | uvrA | 825873..828695 (-) | 2823 | WP_004724090.1 | excinuclease ABC subunit UvrA | - |
| FIU11_RS04420 (FIU11_04420) | galU | 828833..829702 (-) | 870 | WP_004724089.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FIU11_RS04425 (FIU11_04425) | qstR | 829831..830481 (-) | 651 | WP_004724086.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FIU11_RS04430 (FIU11_04430) | ssb | 830764..831297 (+) | 534 | WP_004724084.1 | single-stranded DNA-binding protein | Machinery gene |
| FIU11_RS04435 (FIU11_04435) | csrD | 831433..833427 (+) | 1995 | WP_050780245.1 | RNase E specificity factor CsrD | - |
| FIU11_RS04440 (FIU11_04440) | - | 833435..834880 (+) | 1446 | WP_038150620.1 | MSHA biogenesis protein MshI | - |
| FIU11_RS04445 (FIU11_04445) | gspM | 834880..835530 (+) | 651 | WP_004724077.1 | type II secretion system protein GspM | - |
| FIU11_RS04450 (FIU11_04450) | - | 835523..835834 (+) | 312 | WP_004724074.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19701.83 Da Isoelectric Point: 5.7626
>NTDB_id=368523 FIU11_RS04430 WP_004724084.1 830764..831297(+) (ssb) [Vibrio furnissii strain FDAARGOS_777]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGSRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGSRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=368523 FIU11_RS04430 WP_004724084.1 830764..831297(+) (ssb) [Vibrio furnissii strain FDAARGOS_777]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTAGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAACAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTAGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAACAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
89.944 |
100 |
0.91 |
| ssb | Glaesserella parasuis strain SC1401 |
54.645 |
100 |
0.565 |
| ssb | Neisseria meningitidis MC58 |
47.458 |
100 |
0.475 |
| ssb | Neisseria gonorrhoeae MS11 |
47.458 |
100 |
0.475 |