Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SSPS47_RS21890 Genome accession   NZ_CP048397
Coordinates   4870336..4871052 (-) Length   238 a.a.
NCBI ID   WP_164252539.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4865336..4876052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS21875 (SSPS47_22155) - 4865725..4868937 (-) 3213 WP_203557896.1 tetratricopeptide repeat protein -
  SSPS47_RS21880 (SSPS47_22160) - 4869288..4869650 (+) 363 WP_164252537.1 helix-turn-helix transcriptional regulator -
  SSPS47_RS21885 (SSPS47_22165) clpP 4869728..4870339 (-) 612 WP_164252538.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SSPS47_RS21890 (SSPS47_22170) clpP 4870336..4871052 (-) 717 WP_164252539.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SSPS47_RS21895 (SSPS47_22175) - 4871396..4871908 (+) 513 WP_239065014.1 hypothetical protein -
  SSPS47_RS21900 (SSPS47_22180) - 4872030..4872596 (-) 567 WP_164252540.1 Uma2 family endonuclease -
  SSPS47_RS21905 (SSPS47_22185) - 4872759..4874807 (+) 2049 WP_164252541.1 thioredoxin domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 24787.20 Da        Isoelectric Point: 7.2928

>NTDB_id=368522 SSPS47_RS21890 WP_164252539.1 4870336..4871052(-) (clpP) [Streptomyces sp. S4.7]
MLSTVPRLAAAQTAPVPFDDQIAGRLQHGRIVVLGEQVDDAIANRICAQLLLLSQEDPRRDIVLFVNSPGGSVHAGMAIY
DTMRFIPNDVATLAMGFAASMGQFLLCAGTPGKRYALPNARIMMHQPSGGLGGTAADIAVQAENLAYTKLTMQKLIAEHC
GQSLETIAADQRRDRWFTAEQAKEYGFVDRVVRGVAELGGDAASGFGFEPAGSAGGTRAAGGTRAAGGARTTGKGAAA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=368522 SSPS47_RS21890 WP_164252539.1 4870336..4871052(-) (clpP) [Streptomyces sp. S4.7]
ATGCTCTCGACCGTTCCACGGCTCGCGGCGGCGCAGACCGCCCCGGTGCCGTTCGACGACCAGATCGCCGGCCGCCTTCA
GCACGGCAGGATCGTGGTGCTCGGCGAACAGGTGGACGACGCGATCGCCAACCGGATCTGTGCCCAGCTCCTGCTCCTGT
CGCAGGAGGACCCCAGGCGCGACATCGTCCTGTTCGTGAACAGCCCGGGTGGCTCCGTCCACGCCGGGATGGCCATCTAC
GACACCATGCGGTTCATCCCGAACGACGTCGCCACCCTGGCGATGGGCTTCGCGGCCAGCATGGGCCAGTTCCTGCTCTG
CGCGGGGACACCCGGCAAGCGCTACGCCCTGCCGAACGCGCGGATCATGATGCACCAGCCGTCCGGCGGGCTCGGCGGGA
CGGCGGCCGACATCGCCGTACAGGCCGAGAATCTCGCGTACACCAAGCTCACCATGCAGAAGCTGATCGCGGAGCACTGC
GGCCAGAGCCTGGAGACGATCGCGGCCGACCAGCGCCGGGACCGGTGGTTCACGGCGGAGCAGGCGAAGGAGTACGGCTT
CGTCGACCGCGTCGTACGCGGTGTGGCGGAGCTGGGCGGTGACGCGGCGAGCGGCTTCGGCTTCGAGCCCGCGGGCAGCG
CCGGCGGTACGCGCGCCGCCGGCGGTACGCGCGCCGCCGGCGGTGCCCGCACCACGGGCAAGGGGGCCGCGGCATGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.877

71.849

0.366

Multiple sequence alignment