Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SAA6159_RS08230 Genome accession   NC_017338
Coordinates   1716218..1717222 (-) Length   334 a.a.
NCBI ID   WP_001005764.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711218..1722222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS08215 (SAA6159_01570) yajC 1713750..1714010 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SAA6159_RS08220 (SAA6159_01571) tgt 1714029..1715168 (-) 1140 WP_001112047.1 tRNA guanosine(34) transglycosylase Tgt -
  SAA6159_RS08225 (SAA6159_01572) queA 1715191..1716216 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SAA6159_RS08230 (SAA6159_01573) ruvB 1716218..1717222 (-) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SAA6159_RS08235 (SAA6159_01574) ruvA 1717254..1717856 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SAA6159_RS08240 (SAA6159_01575) - 1717870..1718325 (-) 456 WP_000368897.1 ACT domain-containing protein -
  SAA6159_RS08245 (SAA6159_01576) obgE 1718338..1719630 (-) 1293 WP_000496107.1 GTPase ObgE -
  SAA6159_RS08250 (SAA6159_01577) rpmA 1720121..1720405 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAA6159_RS08255 (SAA6159_01578) - 1720417..1720737 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAA6159_RS08260 (SAA6159_01579) rplU 1720743..1721051 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAA6159_RS08265 (SAA6159_01580) mreD 1721413..1721943 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37703.98 Da        Isoelectric Point: 5.0832

>NTDB_id=36852 SAA6159_RS08230 WP_001005764.1 1716218..1717222(-) (ruvB) [Staphylococcus aureus subsp. aureus JKD6159]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=36852 SAA6159_RS08230 WP_001005764.1 1716218..1717222(-) (ruvB) [Staphylococcus aureus subsp. aureus JKD6159]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTGGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTTGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515