Detailed information NTG0036853

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: SAA6159_RS08235
• Genome accession: NC_017338
• Coordinates: 1717254..1717856 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus subsp. aureus JKD6159
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1712254..1722856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAA6159_RS08215 (SAA6159_01570)	yajC	1713750..1714010 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
SAA6159_RS08220 (SAA6159_01571)	tgt	1714029..1715168 (-)	1140	WP_001112047.1	tRNA guanosine(34) transglycosylase Tgt	-
SAA6159_RS08225 (SAA6159_01572)	queA	1715191..1716216 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SAA6159_RS08230 (SAA6159_01573)	ruvB	1716218..1717222 (-)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SAA6159_RS08235 (SAA6159_01574)	ruvA	1717254..1717856 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
SAA6159_RS08240 (SAA6159_01575)	-	1717870..1718325 (-)	456	WP_000368897.1	ACT domain-containing protein	-
SAA6159_RS08245 (SAA6159_01576)	obgE	1718338..1719630 (-)	1293	WP_000496107.1	GTPase ObgE	-
SAA6159_RS08250 (SAA6159_01577)	rpmA	1720121..1720405 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAA6159_RS08255 (SAA6159_01578)	-	1720417..1720737 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAA6159_RS08260 (SAA6159_01579)	rplU	1720743..1721051 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAA6159_RS08265 (SAA6159_01580)	mreD	1721413..1721943 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
SAA6159_RS08270 (SAA6159_01581)	mreC	1721943..1722785 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=36853 SAA6159_RS08235 WP_000271547.1 1717254..1717856(-) (ruvA) [Staphylococcus aureus subsp. aureus JKD6159]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=36853 SAA6159_RS08235 WP_000271547.1 1717254..1717856(-) (ruvA) [Staphylococcus aureus subsp. aureus JKD6159]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425