Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   E8E07_RS17760 Genome accession   NZ_CP040911
Coordinates   3637637..3638770 (+) Length   377 a.a.
NCBI ID   WP_086398859.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3632637..3643770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS17735 - 3632893..3633099 (-) 207 WP_086398779.1 hypothetical protein -
  E8E07_RS17740 oprC 3633153..3635267 (-) 2115 WP_086398780.1 TonB-dependent copper receptor -
  E8E07_RS17745 - 3635340..3635765 (-) 426 WP_002114087.1 DUF2946 family protein -
  E8E07_RS17750 def 3635809..3636339 (-) 531 WP_032055797.1 peptide deformylase -
  E8E07_RS17755 tsaP 3636462..3637616 (+) 1155 WP_086398781.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E8E07_RS17760 dprA 3637637..3638770 (+) 1134 WP_086398859.1 DNA-processing protein DprA Machinery gene
  E8E07_RS17765 yrdC 3638822..3639391 (+) 570 WP_086398782.1 L-threonylcarbamoyladenylate synthase -
  E8E07_RS17770 - 3639784..3640704 (-) 921 WP_002114137.1 DMT family transporter -
  E8E07_RS17775 - 3640809..3641462 (-) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -
  E8E07_RS17780 nepI 3641598..3642811 (+) 1214 Protein_3430 MFS transporter -
  E8E07_RS17785 - 3642833..3643597 (+) 765 WP_068929847.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41815.34 Da        Isoelectric Point: 6.6989

>NTDB_id=368274 E8E07_RS17760 WP_086398859.1 3637637..3638770(+) (dprA) [Acinetobacter pittii strain AB17H194]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGNCEKAVQPASLAQWSNLGLHANHLKRVDEFQTAQGQAQFEKLVQQV
HQHTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPTQNKKLVEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEQAVVSSTPEI
PEHLVNLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=368274 E8E07_RS17760 WP_086398859.1 3637637..3638770(+) (dprA) [Acinetobacter pittii strain AB17H194]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAACTGCGAAAAGGCAGTCCAACCAGCTAGTTTGGCACAGTGGTCAAATCTTGGCTTAC
ACGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTGGTTCAACAGGTC
CATCAGCATACCGACTTTATTTTAACAGCAGATGACTCAGGCTATCCCACTCAGCTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTGCAACCGCAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCCC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCTTCAGCTCATCAACGTACGATTGCTGTGACAGGAACTGGTTTAGACAGTACCTA
CCCTACTCAAAATAAAAAACTTGTAGAACATATTTTGGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGAACAC
CTCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACACAGTGGCAAAGTCAGCAACAAAACTCCACCGAGCAGGCTGTAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAGTTAACCTTTATCAGTCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTTTTACATCACTCGCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.777

100

0.918

  dprA Acinetobacter baumannii strain A118

91.247

100

0.912

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

43.544

88.329

0.385

  dprA Vibrio campbellii strain DS40M4

40.643

90.716

0.369


Multiple sequence alignment