Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   E8E07_RS17755 Genome accession   NZ_CP040911
Coordinates   3636462..3637616 (+) Length   384 a.a.
NCBI ID   WP_086398781.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631462..3642616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS17730 - 3631611..3632825 (+) 1215 WP_086398778.1 oxygenase MpaB family protein -
  E8E07_RS17735 - 3632893..3633099 (-) 207 WP_086398779.1 hypothetical protein -
  E8E07_RS17740 oprC 3633153..3635267 (-) 2115 WP_086398780.1 TonB-dependent copper receptor -
  E8E07_RS17745 - 3635340..3635765 (-) 426 WP_002114087.1 DUF2946 family protein -
  E8E07_RS17750 def 3635809..3636339 (-) 531 WP_032055797.1 peptide deformylase -
  E8E07_RS17755 tsaP 3636462..3637616 (+) 1155 WP_086398781.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E8E07_RS17760 dprA 3637637..3638770 (+) 1134 WP_086398859.1 DNA-processing protein DprA Machinery gene
  E8E07_RS17765 yrdC 3638822..3639391 (+) 570 WP_086398782.1 L-threonylcarbamoyladenylate synthase -
  E8E07_RS17770 - 3639784..3640704 (-) 921 WP_002114137.1 DMT family transporter -
  E8E07_RS17775 - 3640809..3641462 (-) 654 WP_079377716.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42711.63 Da        Isoelectric Point: 7.2978

>NTDB_id=368273 E8E07_RS17755 WP_086398781.1 3636462..3637616(+) (tsaP) [Acinetobacter pittii strain AB17H194]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVVETYAASPNHNPPSLRSNAPHVYIVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTEGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=368273 E8E07_RS17755 WP_086398781.1 3636462..3637616(+) (tsaP) [Acinetobacter pittii strain AB17H194]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGTAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACATAGTAAAACGAGGAGATACGCTATGGGATATTTCTGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAACATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGTCAAACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACATTACCTACTTTGTTTTATCCGGTAGATGCCACTCAGGTGACAGAGGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTGGACCGAGGTACAGCACAAGGTATCCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTAGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTTTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.323

100

0.893

Multiple sequence alignment