Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   E8E07_RS01595 Genome accession   NZ_CP040911
Coordinates   335415..336473 (+) Length   352 a.a.
NCBI ID   WP_005067078.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330415..341473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01580 - 331479..331811 (+) 333 WP_068563962.1 DUF7709 family protein -
  E8E07_RS01585 rrmA 331814..332638 (+) 825 WP_086399991.1 putative RNA methyltransferase -
  E8E07_RS01590 ponA 332692..335253 (-) 2562 WP_032052651.1 penicillin-binding protein PBP1a -
  E8E07_RS01595 pilM 335415..336473 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  E8E07_RS01600 pilN 336473..337114 (+) 642 WP_086399992.1 PilN domain-containing protein Machinery gene
  E8E07_RS01605 pilO 337111..337863 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  E8E07_RS01610 pilP 337874..338401 (+) 528 WP_086399364.1 pilus assembly protein PilP Machinery gene
  E8E07_RS01615 pilQ 338464..340629 (+) 2166 WP_086611346.1 type IV pilus secretin PilQ Machinery gene
  E8E07_RS01620 aroK 340641..341210 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39068.65 Da        Isoelectric Point: 4.4657

>NTDB_id=368233 E8E07_RS01595 WP_005067078.1 335415..336473(+) (pilM) [Acinetobacter pittii strain AB17H194]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPHTTNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=368233 E8E07_RS01595 WP_005067078.1 335415..336473(+) (pilM) [Acinetobacter pittii strain AB17H194]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGCGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTAACGCCTTTACCTGAGAACAGTGTAGTTGAAAAAAATA
TTTTGAATCCAGAAGCAGTTGCAGAAGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCACACCACTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAACGATGATGAACGTGAAGTTCAGAT
TCGATTAGATGCGGAGCAATATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGC
CGAATCCAAATCGTGTGAATGTACTTTTAGTCGCAACACGAACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTG
GTTGATTTAACGCCTAAGCTTGCTGATGTTGAAAGTTATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACC
CATGGGTGCAAATACCATTGGCATTTTAGATATTGGCCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCA
TTTATACCCGTGAACAAGTCTTTGGCGGTAAACAGCTTACTTTGGAAATTCAAAGCCGTTACGGTTTGTCATTAGAAGAA
GCGGGACGCGCTAAAAAAGAACGTTCTTTGCCAGATGATTATGACATCGAAATCTTAGAACCATTTTTAGATGCTGTAGT
TCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTCTTCATCCCAATTCAATGAAATTGACCATATTTTGCTAGCGGGTG
GCAATGCCAACATTCCAGGGCTTGCTAAATTGTTGCAGCAGAAACTCGGTTACCGAGTCACTATTGCCAATCCATTTTTA
CAAATGGGTTTCTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCTTCATTAATGGTTGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.307

100

0.963
  comM Acinetobacter nosocomialis M2

96.307

100

0.963
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42

Multiple sequence alignment