Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   E8E07_RS01600 Genome accession   NZ_CP040911
Coordinates   336473..337114 (+) Length   213 a.a.
NCBI ID   WP_086399992.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331473..342114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01580 - 331479..331811 (+) 333 WP_068563962.1 DUF7709 family protein -
  E8E07_RS01585 rrmA 331814..332638 (+) 825 WP_086399991.1 putative RNA methyltransferase -
  E8E07_RS01590 ponA 332692..335253 (-) 2562 WP_032052651.1 penicillin-binding protein PBP1a -
  E8E07_RS01595 pilM 335415..336473 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  E8E07_RS01600 pilN 336473..337114 (+) 642 WP_086399992.1 PilN domain-containing protein Machinery gene
  E8E07_RS01605 pilO 337111..337863 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  E8E07_RS01610 pilP 337874..338401 (+) 528 WP_086399364.1 pilus assembly protein PilP Machinery gene
  E8E07_RS01615 pilQ 338464..340629 (+) 2166 WP_086611346.1 type IV pilus secretin PilQ Machinery gene
  E8E07_RS01620 aroK 340641..341210 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24036.55 Da        Isoelectric Point: 5.4186

>NTDB_id=368234 E8E07_RS01600 WP_086399992.1 336473..337114(+) (pilN) [Acinetobacter pittii strain AB17H194]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVDMNKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=368234 E8E07_RS01600 WP_086399992.1 336473..337114(+) (pilN) [Acinetobacter pittii strain AB17H194]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGGGTGACTACAACAGATGATACCGCCAATACATCTGTAGATATGAATAAAGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment