Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FHN83_RS13075 Genome accession   NZ_CP040889
Coordinates   2361763..2362290 (+) Length   175 a.a.
NCBI ID   WP_039031947.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain Z96-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2356763..2367290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHN83_RS13055 (FHN83_13055) aphA 2357086..2357799 (+) 714 WP_039031943.1 acid phosphatase AphA -
  FHN83_RS13060 (FHN83_13060) - 2357915..2358331 (+) 417 WP_138370029.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FHN83_RS13065 (FHN83_13065) - 2358334..2358687 (+) 354 WP_039031945.1 MmcQ/YjbR family DNA-binding protein -
  FHN83_RS13070 (FHN83_13070) uvrA 2358688..2361513 (-) 2826 WP_138370030.1 excinuclease ABC subunit UvrA -
  FHN83_RS13075 (FHN83_13075) ssb 2361763..2362290 (+) 528 WP_039031947.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FHN83_RS13080 (FHN83_13080) - 2362375..2362656 (-) 282 WP_039031948.1 YjcB family protein -
  FHN83_RS13085 (FHN83_13085) - 2363204..2364607 (+) 1404 WP_139563989.1 sensor domain-containing diguanylate cyclase -
  FHN83_RS13090 (FHN83_13090) - 2364947..2366533 (+) 1587 WP_139563990.1 EAL domain-containing protein -
  FHN83_RS13095 (FHN83_13095) soxS 2366530..2366856 (-) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18721.73 Da        Isoelectric Point: 5.2456

>NTDB_id=368068 FHN83_RS13075 WP_039031947.1 2361763..2362290(+) (ssb) [Leclercia adecarboxylata strain Z96-1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQPSAPA
QSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=368068 FHN83_RS13075 WP_039031947.1 2361763..2362290(+) (ssb) [Leclercia adecarboxylata strain Z96-1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACCGAAGTGGTGGTCAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCCGTCTGCGCCAGCG
CAGTCCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.789
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366

Multiple sequence alignment