Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EAM_RS00785 Genome accession   NC_013971
Coordinates   185282..186802 (-) Length   506 a.a.
NCBI ID   WP_004154893.1    Uniprot ID   A0A830ZW65
Organism   Erwinia amylovora ATCC 49946     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 180282..191802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAM_RS00775 (EAM_0148) hdfR 183964..184791 (-) 828 WP_004154889.1 HTH-type transcriptional regulator HdfR -
  EAM_RS00780 (EAM_0149) - 184912..185250 (+) 339 WP_004154890.1 DUF413 domain-containing protein -
  EAM_RS00785 (EAM_0150) comM 185282..186802 (-) 1521 WP_004154893.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EAM_RS19065 - 187137..187235 (+) 99 WP_099258353.1 IlvGEDA operon leader peptide -
  EAM_RS00790 (EAM_0151) ilvG 187376..189022 (+) 1647 WP_013035760.1 acetolactate synthase 2 catalytic subunit -
  EAM_RS00795 (EAM_0152) ilvM 189019..189276 (+) 258 WP_004154896.1 acetolactate synthase 2 small subunit -
  EAM_RS00800 (EAM_0153) - 189295..190221 (+) 927 WP_004154897.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55103.24 Da        Isoelectric Point: 7.4176

>NTDB_id=36801 EAM_RS00785 WP_004154893.1 185282..186802(-) (comM) [Erwinia amylovora ATCC 49946]
MSLSVAYTRAAIGIQAPLVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAILNSGFFFPAKRITVSLAPADLPKEGGR
YDLPIAVAILAASEQVPAEKLIQYEFLGELALTGTLRGVQGATPAALAALDARRQLILSAENQHDVGLIRHGESLIATHL
LEVCAFLHGKAPLDAAHCEPEESLPSTGDLNEIIGQQQAKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLMPPLSDR
EALESASLASLISGSDFRHNWRQRPFRAPHHSASLYALVGGGSLPKPGEISLAHNGVLFLDELPEFERRALDALREPLES
GEISISRARAKITYPARFQLIAAMNPSPTGHYRGPHNRSSPQQTLRYLSRLSGPFLDRFDISLEVPLLPAGMMSAQHGES
ESSHQVRERVLLARERQLARCNKMNAAMSNQEIRACCKLTPEDAEWLERVMIQLGLSVRAWQRILKVARTIADMAGEPWI
SREHLTEAVSYRAIDRLLIHLQNSLD

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=36801 EAM_RS00785 WP_004154893.1 185282..186802(-) (comM) [Erwinia amylovora ATCC 49946]
ATGTCGCTATCAGTTGCTTACACCCGTGCCGCGATTGGCATCCAGGCACCACTGGTGTCCGTGGAAGTTCATCTCAGTAA
TGGCCTTCCTGCATTATCACTGGTTGGATTGCCGGAAACCACCGTTAAGGAGGCTCGTGACAGAGTGCGCAGCGCCATCC
TTAACAGCGGTTTTTTTTTCCCGGCTAAACGGATAACCGTTAGCCTGGCACCGGCCGACCTGCCTAAAGAAGGCGGCAGA
TATGACTTACCTATCGCTGTCGCCATTCTCGCGGCTTCAGAACAGGTTCCGGCAGAAAAACTTATTCAGTATGAATTTCT
GGGTGAACTGGCCCTCACAGGCACGCTACGTGGCGTACAGGGCGCTACTCCCGCTGCGCTGGCGGCGTTAGACGCTCGTC
GGCAACTGATTCTCTCAGCCGAGAATCAGCATGATGTTGGGTTGATTCGGCATGGCGAGAGCCTGATTGCCACCCATCTT
CTGGAGGTGTGCGCCTTTTTACATGGTAAAGCACCACTGGATGCTGCGCACTGCGAACCTGAAGAATCCCTGCCGTCCAC
GGGAGATTTAAATGAAATTATCGGCCAACAGCAGGCAAAGCGCGCGCTGGAGATCACGGCAGCGGGAGGGCACAATCTGT
TGCTCATCGGCCCGCCGGGAACCGGCAAAACGATGCTGGCATCCAGACTTAGTGGCCTGATGCCGCCCCTGAGCGATCGT
GAAGCGTTAGAGAGCGCCAGCCTTGCCAGTCTGATATCCGGCAGCGATTTTCGGCATAACTGGCGCCAGAGACCCTTCCG
CGCCCCTCACCATAGCGCATCACTGTATGCGCTGGTGGGTGGAGGATCACTGCCTAAACCCGGGGAAATTTCGCTGGCCC
ATAACGGGGTACTGTTTCTGGATGAGCTGCCCGAGTTTGAACGCCGTGCGCTGGATGCACTGCGTGAACCGCTTGAATCG
GGAGAGATTAGCATTTCGCGAGCCAGAGCAAAAATTACTTATCCGGCCCGCTTCCAGCTGATTGCAGCAATGAACCCCAG
CCCAACCGGACATTATCGCGGCCCGCATAATCGCTCATCACCCCAGCAGACGCTGCGCTATCTGAGCCGCCTCTCCGGCC
CATTCCTTGACCGTTTTGATATTTCTCTGGAAGTACCACTGCTGCCAGCAGGAATGATGAGTGCTCAACATGGCGAAAGT
GAGTCCAGCCATCAGGTGCGCGAACGGGTGCTGTTGGCCCGTGAACGGCAGCTGGCGCGCTGTAATAAAATGAATGCAGC
AATGAGCAACCAGGAAATCCGGGCTTGTTGTAAACTGACGCCTGAGGATGCTGAATGGCTGGAGCGGGTAATGATCCAGC
TGGGTCTGTCGGTACGCGCATGGCAACGCATTCTGAAAGTTGCCCGCACTATCGCAGACATGGCCGGGGAGCCATGGATT
AGTCGGGAACACCTGACCGAAGCCGTTAGCTACCGGGCTATCGACCGTTTACTGATCCATCTACAAAATAGTCTGGATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A830ZW65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.598

100

0.628
  comM Glaesserella parasuis strain SC1401

61.144

100

0.613
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.956

99.209

0.605
  comM Legionella pneumophila str. Paris

50.402

98.419

0.496
  comM Legionella pneumophila strain ERS1305867

50.402

98.419

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437

Multiple sequence alignment