Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FHQ07_RS09425 Genome accession   NZ_CP040871
Coordinates   1990683..1992197 (-) Length   504 a.a.
NCBI ID   WP_139716563.1    Uniprot ID   A0A5B7ZUM2
Organism   Thermomonas aquatica strain SY21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1985683..1997197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ07_RS09410 (FHQ07_09410) - 1986179..1988668 (+) 2490 WP_139716560.1 putative peptide modification system cyclase -
  FHQ07_RS09415 (FHQ07_09415) - 1988737..1989090 (-) 354 WP_168191532.1 NHLP-related RiPP peptide -
  FHQ07_RS09420 (FHQ07_09420) - 1989089..1990324 (+) 1236 WP_139716562.1 putative peptide maturation dehydrogenase -
  FHQ07_RS09425 (FHQ07_09425) comM 1990683..1992197 (-) 1515 WP_139716563.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FHQ07_RS09430 (FHQ07_09430) - 1992209..1992499 (-) 291 WP_139718003.1 accessory factor UbiK family protein -
  FHQ07_RS09435 (FHQ07_09435) - 1992686..1993024 (+) 339 WP_139716564.1 P-II family nitrogen regulator -
  FHQ07_RS09440 (FHQ07_09440) - 1993030..1994901 (-) 1872 WP_240703601.1 diguanylate cyclase -
  FHQ07_RS09445 (FHQ07_09445) speE 1995037..1995891 (-) 855 WP_139716566.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53746.56 Da        Isoelectric Point: 8.2139

>NTDB_id=367753 FHQ07_RS09425 WP_139716563.1 1990683..1992197(-) (comM) [Thermomonas aquatica strain SY21]
MGLAIVHSRARVGVRAPDVRVEVHLAGGLPSMNIVGLPEAAVREAKDRVRAAIQCAQFEFPARRITVNLAPADLPKDGGR
YDLAIALGILAASGQLSADGLEAWEFLGELALTGEIRAVDGVLAAAIAVGQAGRKLLVAPANGHEAALACNVEVRTARTL
LEVCAALDARKELPLAQALPCHETRQADLADVRGQVQARRALEIAAAGSHHLLFAGSPGSGKTLLASRLCGILPEPSQAE
ALEAASIASASGRGLDLAHWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWSRHALEVLREPLESG
SVTVSRAARQCEFPARFQLIAAMNPCPCGWAGDPSGRCLCNDEAIRRYRARISGPLLERIDLHVEVPRLPATALRHDAAP
GESSAVVRARVLRARRLQEARCGTTNARLDQAQTDAHCRLAGRDFALLERAVESLQLSARSLHRILRVARTIADLAGCES
IETPHLTEAIGYRRLERGRERAAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=367753 FHQ07_RS09425 WP_139716563.1 1990683..1992197(-) (comM) [Thermomonas aquatica strain SY21]
ATGGGTCTTGCGATCGTGCACAGCCGTGCGCGGGTCGGCGTGCGCGCGCCCGACGTCCGCGTCGAAGTCCACCTGGCCGG
CGGATTGCCGTCGATGAACATCGTCGGGCTCCCGGAAGCGGCGGTGCGCGAAGCCAAGGATCGCGTGCGCGCGGCGATCC
AGTGCGCGCAATTCGAATTCCCGGCGCGGCGCATCACCGTGAACCTCGCGCCGGCCGATTTGCCGAAGGACGGCGGCCGT
TACGACCTCGCCATCGCACTGGGCATCCTCGCCGCCAGCGGGCAGCTGTCGGCCGACGGGCTGGAAGCCTGGGAATTCCT
CGGCGAGCTCGCGCTCACCGGCGAGATCCGCGCGGTGGACGGCGTGCTCGCTGCCGCGATCGCGGTGGGCCAGGCCGGGC
GCAAGCTGCTGGTGGCGCCCGCCAACGGCCATGAGGCGGCGCTCGCTTGCAACGTGGAGGTGCGCACCGCGCGCACCCTG
CTGGAAGTCTGCGCGGCGCTGGACGCACGCAAGGAACTGCCGCTCGCGCAGGCGCTGCCCTGCCATGAAACCCGGCAAGC
GGACCTCGCCGACGTGCGCGGGCAGGTCCAGGCCCGGCGCGCACTGGAGATCGCGGCGGCCGGATCGCACCACCTGCTGT
TCGCCGGCTCGCCCGGCAGCGGCAAGACCCTGCTGGCCTCGCGGCTGTGCGGGATCCTGCCGGAACCCTCGCAAGCCGAG
GCACTGGAAGCGGCCAGCATCGCCTCCGCCAGCGGGCGCGGCCTGGATCTCGCGCACTGGCGGCAACGCCCGTTCCGCGC
CCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCGCCGATCCGCGCCCCGGCGAGATCTCGCTGGCGCACC
ATGGCGTGCTGTTCCTCGACGAACTCCCGGAGTGGAGCCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCCGGC
AGCGTGACCGTCTCGCGCGCGGCGCGGCAATGCGAATTCCCGGCGCGCTTCCAGTTGATCGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGATCCGTCCGGCCGCTGCCTGTGCAACGACGAGGCGATCCGCCGTTACCGCGCGCGCATCTCCG
GACCGCTGCTGGAACGGATCGACCTGCACGTGGAAGTGCCGCGCCTCCCGGCGACGGCCTTGCGCCACGACGCCGCCCCG
GGCGAATCCAGCGCGGTCGTGCGCGCACGCGTGCTGCGCGCACGCCGGTTGCAGGAGGCGCGCTGCGGCACCACCAACGC
GCGCCTCGACCAGGCCCAGACCGATGCGCACTGCAGGCTGGCCGGACGCGACTTCGCCCTGCTGGAACGCGCCGTCGAGA
GCCTGCAGCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGGGTCGCGCGCACCATCGCCGACCTGGCCGGCTGCGAAAGC
ATCGAGACCCCGCACCTCACCGAGGCGATCGGCTATCGGCGGCTGGAGCGCGGGCGCGAACGTGCCGCCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7ZUM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.11

99.008

0.546
  comM Vibrio campbellii strain DS40M4

54.509

99.008

0.54
  comM Glaesserella parasuis strain SC1401

52.663

100

0.53
  comM Haemophilus influenzae Rd KW20

52.883

99.802

0.528
  comM Legionella pneumophila str. Paris

48.8

99.206

0.484
  comM Legionella pneumophila strain ERS1305867

48.8

99.206

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.435

Multiple sequence alignment