Detailed information NTG0367332

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: FHI56_RS02575
• Genome accession: NZ_CP040804
• Coordinates: 291074..291511 (+)
• Length: 145 a.a.
• NCBI ID: WP_045769383.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain LAB813
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 286074..296511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FHI56_RS02545 (FHI56_02545)	-	287749..288111 (+)	363	WP_002887019.1	DUF1033 family protein	-
FHI56_RS02550 (FHI56_02550)	comGA/cglA/cilD	288191..289132 (+)	942	WP_038676863.1	competence type IV pilus ATPase ComGA	Machinery gene
FHI56_RS02555 (FHI56_02555)	comYB	289014..290114 (+)	1101	WP_126405090.1	competence type IV pilus assembly protein ComGB	Machinery gene
FHI56_RS02560 (FHI56_02560)	comYC	290123..290437 (+)	315	WP_170314557.1	competence type IV pilus major pilin ComGC	Machinery gene
FHI56_RS02565 (FHI56_02565)	comYD	290397..290825 (+)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
FHI56_RS02570 (FHI56_02570)	comGE	290857..291087 (+)	231	WP_002887015.1	competence type IV pilus minor pilin ComGE	-
FHI56_RS02575 (FHI56_02575)	comYF	291074..291511 (+)	438	WP_045769383.1	competence type IV pilus minor pilin ComGF	Machinery gene
FHI56_RS02580 (FHI56_02580)	comGG	291489..291806 (+)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
FHI56_RS02585 (FHI56_02585)	comYH	291851..292807 (+)	957	WP_138261573.1	class I SAM-dependent methyltransferase	Machinery gene
FHI56_RS02590 (FHI56_02590)	-	292864..294057 (+)	1194	WP_149561137.1	acetate kinase	-
FHI56_RS02595 (FHI56_02595)	-	294308..294505 (+)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
FHI56_RS02600 (FHI56_02600)	-	294517..295173 (+)	657	WP_037601483.1	CPBP family intramembrane glutamic endopeptidase	-
FHI56_RS02605 (FHI56_02605)	-	295251..295697 (+)	447	WP_013991259.1	hypothetical protein	-
FHI56_RS02610 (FHI56_02610)	-	295810..296472 (+)	663	WP_111686674.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16182.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=367332 FHI56_RS02575 WP_045769383.1 291074..291511(+) (comYF) [Streptococcus salivarius strain LAB813]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=367332 FHI56_RS02575 WP_045769383.1 291074..291511(+) (comYF) [Streptococcus salivarius strain LAB813]
ATGTCTCTCAATAGCAAGGTTCGTGCTTTTACCCTCTTGGAATGTCTAGTAGCTCTATTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTCCTAT
TTGTCCAACAAATGGAGGCAGAGTTAGAAGGTTGTCAGTTGGTAAAGGTAGAAGGGAACAAGCTCTATGTTAAGCAGGAT
AATCAAGACCTGGCTTTTGGCCTTTCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAAGCTAGTACAATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae D39	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae R6	50	97.931	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50	97.931	0.49
comGF/cglF	Streptococcus mitis SK321	47.222	99.31	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.222	99.31	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434