Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | FHI56_RS02585 | Genome accession | NZ_CP040804 |
| Coordinates | 291851..292807 (+) | Length | 318 a.a. |
| NCBI ID | WP_138261573.1 | Uniprot ID | A0AAW7PI86 |
| Organism | Streptococcus salivarius strain LAB813 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 286851..297807
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FHI56_RS02545 (FHI56_02545) | - | 287749..288111 (+) | 363 | WP_002887019.1 | DUF1033 family protein | - |
| FHI56_RS02550 (FHI56_02550) | comGA/cglA/cilD | 288191..289132 (+) | 942 | WP_038676863.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FHI56_RS02555 (FHI56_02555) | comYB | 289014..290114 (+) | 1101 | WP_126405090.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FHI56_RS02560 (FHI56_02560) | comYC | 290123..290437 (+) | 315 | WP_170314557.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FHI56_RS02565 (FHI56_02565) | comYD | 290397..290825 (+) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FHI56_RS02570 (FHI56_02570) | comGE | 290857..291087 (+) | 231 | WP_002887015.1 | competence type IV pilus minor pilin ComGE | - |
| FHI56_RS02575 (FHI56_02575) | comYF | 291074..291511 (+) | 438 | WP_045769383.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FHI56_RS02580 (FHI56_02580) | comGG | 291489..291806 (+) | 318 | WP_021144683.1 | competence type IV pilus minor pilin ComGG | - |
| FHI56_RS02585 (FHI56_02585) | comYH | 291851..292807 (+) | 957 | WP_138261573.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FHI56_RS02590 (FHI56_02590) | - | 292864..294057 (+) | 1194 | WP_149561137.1 | acetate kinase | - |
| FHI56_RS02595 (FHI56_02595) | - | 294308..294505 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| FHI56_RS02600 (FHI56_02600) | - | 294517..295173 (+) | 657 | WP_037601483.1 | CPBP family intramembrane glutamic endopeptidase | - |
| FHI56_RS02605 (FHI56_02605) | - | 295251..295697 (+) | 447 | WP_013991259.1 | hypothetical protein | - |
| FHI56_RS02610 (FHI56_02610) | - | 295810..296472 (+) | 663 | WP_111686674.1 | CPBP family intramembrane glutamic endopeptidase | - |
| FHI56_RS02615 (FHI56_02615) | proC | 296499..297269 (-) | 771 | WP_002885846.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35779.69 Da Isoelectric Point: 4.3808
>NTDB_id=367333 FHI56_RS02585 WP_138261573.1 291851..292807(+) (comYH) [Streptococcus salivarius strain LAB813]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKRNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKRNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=367333 FHI56_RS02585 WP_138261573.1 291851..292807(+) (comYH) [Streptococcus salivarius strain LAB813]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGCGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGGTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAGACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTAACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTGTCAGGCTATGCTGATATTATTGCAGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACGTAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGCGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGGTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAGACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTAACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTGTCAGGCTATGCTGATATTATTGCAGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACGTAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTTCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
70.476 |
99.057 |
0.698 |
| comYH | Streptococcus mutans UA140 |
70.476 |
99.057 |
0.698 |