Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | FHI56_RS02560 | Genome accession | NZ_CP040804 |
| Coordinates | 290123..290437 (+) | Length | 104 a.a. |
| NCBI ID | WP_170314557.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain LAB813 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 285123..295437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FHI56_RS02545 (FHI56_02545) | - | 287749..288111 (+) | 363 | WP_002887019.1 | DUF1033 family protein | - |
| FHI56_RS02550 (FHI56_02550) | comGA/cglA/cilD | 288191..289132 (+) | 942 | WP_038676863.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FHI56_RS02555 (FHI56_02555) | comYB | 289014..290114 (+) | 1101 | WP_126405090.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FHI56_RS02560 (FHI56_02560) | comYC | 290123..290437 (+) | 315 | WP_170314557.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FHI56_RS02565 (FHI56_02565) | comYD | 290397..290825 (+) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FHI56_RS02570 (FHI56_02570) | comGE | 290857..291087 (+) | 231 | WP_002887015.1 | competence type IV pilus minor pilin ComGE | - |
| FHI56_RS02575 (FHI56_02575) | comYF | 291074..291511 (+) | 438 | WP_045769383.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FHI56_RS02580 (FHI56_02580) | comGG | 291489..291806 (+) | 318 | WP_021144683.1 | competence type IV pilus minor pilin ComGG | - |
| FHI56_RS02585 (FHI56_02585) | comYH | 291851..292807 (+) | 957 | WP_138261573.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FHI56_RS02590 (FHI56_02590) | - | 292864..294057 (+) | 1194 | WP_149561137.1 | acetate kinase | - |
| FHI56_RS02595 (FHI56_02595) | - | 294308..294505 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| FHI56_RS02600 (FHI56_02600) | - | 294517..295173 (+) | 657 | WP_037601483.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11442.38 Da Isoelectric Point: 9.9219
>NTDB_id=367330 FHI56_RS02560 WP_170314557.1 290123..290437(+) (comYC) [Streptococcus salivarius strain LAB813]
MKKLKAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLKAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=367330 FHI56_RS02560 WP_170314557.1 290123..290437(+) (comYC) [Streptococcus salivarius strain LAB813]
TTGAAAAAATTGAAGGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAAGGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
71.154 |
100 |
0.712 |
| comYC | Streptococcus mutans UA159 |
71.154 |
100 |
0.712 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
65.714 |
100 |
0.663 |
| comGC/cglC | Streptococcus mitis SK321 |
64.646 |
95.192 |
0.615 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.804 |
98.077 |
0.587 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.804 |
98.077 |
0.587 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.804 |
98.077 |
0.587 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.804 |
98.077 |
0.587 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
60.396 |
97.115 |
0.587 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |