Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SLIT_RS00315 Genome accession   NC_013959
Coordinates   67637..69127 (-) Length   496 a.a.
NCBI ID   WP_013028203.1    Uniprot ID   D5CTJ8
Organism   Sideroxydans lithotrophicus ES-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 62637..74127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLIT_RS00305 (Slit_0060) metH 63293..67012 (-) 3720 WP_013028201.1 methionine synthase -
  SLIT_RS00310 (Slit_0061) - 67169..67624 (+) 456 WP_013028202.1 bacteriohemerythrin -
  SLIT_RS00315 (Slit_0062) comM 67637..69127 (-) 1491 WP_013028203.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SLIT_RS00320 (Slit_0063) - 69134..69346 (-) 213 WP_013028204.1 accessory factor UbiK family protein -
  SLIT_RS00325 (Slit_0064) - 69578..70363 (+) 786 WP_013028205.1 TorF family putative porin -
  SLIT_RS00330 (Slit_0065) glnK 70415..70753 (+) 339 WP_013028206.1 P-II family nitrogen regulator -
  SLIT_RS00335 (Slit_0066) - 70765..72267 (+) 1503 WP_013028207.1 ammonium transporter -
  SLIT_RS00340 (Slit_0067) - 72362..72625 (+) 264 WP_150102907.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53592.40 Da        Isoelectric Point: 7.4382

>NTDB_id=36731 SLIT_RS00315 WP_013028203.1 67637..69127(-) (comM) [Sideroxydans lithotrophicus ES-1]
MGLAVLYSRGLAGMDAALVTVEVHLANGLPNFTIVGLPEAEVKESKDRVRAALQNCQFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSDKLAEYEYAGELALTGELRAIRGALAMTYRASDSGRAFILPAVNAAEAALVEDAAVYPAQSL
LQVAAHLAGREALERYIPDTQAVLPHYPDMREVKGQAQCKRALEIAAAGGHSVLMSGPPGTGKSMLAARFPGILPQMTQQ
EALESAAMQSLGGMFEVENWKRRPYRAPHHTASAVALVGGGSNPRPGEISVAMHGVLFLDELPEFDRGVLEVLREPLESG
RITISRAARRADFKAQFQLVAAMNPCPCGYLGHYNGKCRCTPDQVSRYRGKISGPLLDRIDIQIEVPAVPQEDLLRQADG
ENSMAIQARAETARQRQLARQGKPNAQLSVTEIETWCAPDAQGEALLRQSIARLNLSARAYHRVLKVARTIADLAGSESI
QIGHIAEAVQFRRMSF

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=36731 SLIT_RS00315 WP_013028203.1 67637..69127(-) (comM) [Sideroxydans lithotrophicus ES-1]
ATGGGGCTGGCTGTACTCTACAGTCGCGGCCTTGCGGGCATGGATGCCGCGCTGGTCACCGTCGAGGTTCATCTCGCCAA
CGGCCTGCCCAACTTCACCATCGTCGGCCTGCCCGAAGCCGAGGTGAAAGAGAGCAAAGACCGCGTGCGCGCCGCTTTGC
AAAACTGCCAGTTCGAATTCCCCAGCCGCCGCATCACCGTCAATCTCGCCCCGGCCGACCTGCCGAAAGAGAGCGGACGT
TTCGACCTGCCCATCGCGCTGGGCATACTCGCTGCATCGGGGCAGATACCTTCCGACAAGCTGGCCGAGTACGAATATGC
CGGCGAACTGGCGCTGACCGGCGAGTTGCGCGCGATACGCGGTGCGCTGGCGATGACCTACCGCGCCTCGGACTCGGGCC
GCGCTTTCATCCTGCCTGCCGTGAACGCAGCGGAAGCCGCGCTGGTGGAAGATGCCGCAGTCTATCCCGCGCAATCGCTG
CTGCAAGTCGCCGCGCATCTGGCCGGGCGCGAGGCGCTGGAACGATATATCCCCGATACGCAAGCCGTCCTTCCGCATTA
TCCGGACATGCGCGAGGTGAAAGGCCAAGCGCAGTGCAAACGCGCGCTGGAGATCGCCGCCGCAGGCGGACATAGCGTGT
TGATGTCCGGCCCGCCCGGCACGGGCAAGAGCATGCTGGCAGCGCGTTTCCCCGGCATCCTGCCGCAGATGACGCAACAG
GAAGCACTGGAGAGCGCGGCCATGCAATCGCTGGGCGGCATGTTCGAAGTGGAGAACTGGAAGCGGCGGCCTTACCGCGC
GCCGCACCATACGGCCTCCGCTGTAGCATTAGTCGGGGGCGGCAGCAATCCGCGCCCGGGCGAGATCTCCGTCGCCATGC
ACGGCGTGCTGTTCCTGGACGAGTTGCCGGAGTTCGACCGCGGCGTGCTGGAAGTATTGCGCGAACCATTGGAAAGCGGA
CGCATCACCATCTCGCGCGCAGCACGCCGTGCCGATTTCAAGGCACAGTTCCAGCTCGTCGCAGCCATGAACCCGTGCCC
GTGCGGTTATCTTGGCCACTACAACGGCAAGTGCCGTTGCACGCCGGATCAGGTGTCGCGCTATCGCGGCAAGATATCCG
GGCCGCTGCTGGACCGCATCGATATCCAGATCGAAGTGCCTGCCGTGCCGCAGGAAGATCTACTCAGACAGGCCGATGGC
GAAAACAGTATGGCGATACAGGCAAGGGCGGAAACGGCACGCCAGCGGCAACTTGCACGGCAAGGGAAGCCCAACGCGCA
ACTCTCCGTCACCGAGATCGAGACGTGGTGTGCACCAGATGCACAAGGCGAGGCGTTGCTGCGCCAGTCCATCGCCCGTT
TGAACCTTTCAGCACGCGCCTATCATCGGGTGCTCAAGGTGGCACGTACGATCGCCGACCTGGCAGGCAGCGAAAGCATC
CAGATCGGGCACATCGCCGAGGCGGTGCAATTCAGGCGCATGAGTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5CTJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.908

100

0.542
  comM Vibrio campbellii strain DS40M4

54.016

100

0.542
  comM Glaesserella parasuis strain SC1401

52.988

100

0.536
  comM Haemophilus influenzae Rd KW20

52.39

100

0.53
  comM Legionella pneumophila str. Paris

50.503

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.503

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.032

100

0.468

Multiple sequence alignment