Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGD67_RS10755 Genome accession   NZ_CP040755
Coordinates   2368970..2370490 (+) Length   506 a.a.
NCBI ID   WP_257174997.1    Uniprot ID   -
Organism   Colwellia sp. M166     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2363970..2375490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGD67_RS10740 (FGD67_10650) - 2365511..2366437 (-) 927 WP_257174994.1 branched-chain amino acid transaminase -
  FGD67_RS10745 (FGD67_10655) ilvM 2366541..2366798 (-) 258 WP_257174995.1 acetolactate synthase 2 small subunit -
  FGD67_RS10750 (FGD67_10660) ilvG 2366799..2368463 (-) 1665 WP_257174996.1 acetolactate synthase 2 catalytic subunit -
  FGD67_RS10755 (FGD67_10665) comM 2368970..2370490 (+) 1521 WP_257174997.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGD67_RS10760 (FGD67_10670) ilvY 2370501..2371373 (-) 873 WP_257174998.1 HTH-type transcriptional activator IlvY -
  FGD67_RS10765 (FGD67_10675) ilvC 2371546..2373030 (+) 1485 WP_257174999.1 ketol-acid reductoisomerase -
  FGD67_RS10770 (FGD67_10680) - 2373189..2373506 (+) 318 WP_257175000.1 pyrimidine/purine nucleoside phosphorylase -
  FGD67_RS10775 (FGD67_10685) - 2373717..2374964 (-) 1248 WP_257175001.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55770.06 Da        Isoelectric Point: 7.3597

>NTDB_id=367025 FGD67_RS10755 WP_257174997.1 2368970..2370490(+) (comM) [Colwellia sp. M166]
MTLACVFSRARVGLESPLVTVEVHLANGLPAFNIVGLPETSVREAKDRVRSAIINCGYEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAAAQQLPEADLKNYEFAGELALSGELRAIIGEIPMAMACQKSGRTLVIPNENAEQASWVQNVKILSLSHL
NQLFPHFLKQKTLPLVETKTLQAYNTQSEHDIADVVGQPLAKRALEIAASGGHNLLFIGPPGTGKTMLASRLPGILPAMT
EQEALSSAAIQSICHKNVSPESWLTRPFRAPHHTASSAALVGGGSHPQPGEISLAHNGVLFLDELPEFERKVLDVLREPM
ESGEVTISRALLKQTFPAQFQLVAAMNPSPTGFYNDKRSTPEQVLRYLNRLSGPFLDRIDIQIEVTRLPRGMWANETERG
ESSNTIQKRVSKCYQKQIQRQGKVNAQLGSAEVRSYCQLDPEDNEFLELAIEKLNLSTRAHHKILKISRTLADMESVDHI
ERKHLIEALSYRAMDRILRHLTDAIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=367025 FGD67_RS10755 WP_257174997.1 2368970..2370490(+) (comM) [Colwellia sp. M166]
ATGACCTTAGCCTGTGTTTTTAGTAGAGCCCGTGTTGGCCTCGAATCTCCGTTAGTGACGGTAGAGGTGCACTTAGCCAA
CGGCTTGCCCGCATTCAACATTGTCGGTTTACCGGAAACCTCAGTTCGAGAAGCAAAAGACCGTGTGCGTAGTGCCATTA
TTAATTGTGGTTATGAGTTTCCAGCTAAGCGTATTACGGTAAATTTAGCGCCTGCTGATTTACCCAAAGAAGGCGGACGT
TTCGATCTTCCTATTGCCTTAGGTATTCTTGCCGCTGCCCAACAACTGCCAGAAGCAGATTTAAAAAACTATGAATTCGC
CGGAGAGCTTGCTTTATCAGGCGAATTACGCGCCATTATTGGTGAGATCCCAATGGCGATGGCTTGTCAAAAAAGCGGCC
GCACATTAGTAATACCCAATGAAAATGCCGAACAAGCAAGTTGGGTGCAAAACGTGAAGATATTAAGCCTGTCACACTTG
AATCAATTATTTCCTCATTTTCTCAAACAAAAAACTTTACCCCTCGTCGAAACAAAAACCTTACAAGCGTATAACACGCA
GAGTGAACACGATATCGCTGATGTGGTCGGTCAACCATTAGCAAAACGCGCATTAGAAATTGCCGCTAGCGGTGGTCACA
ACTTGCTATTTATTGGTCCTCCCGGCACAGGAAAAACCATGTTAGCCAGTAGATTACCGGGTATTCTGCCAGCGATGACC
GAACAAGAAGCACTCTCAAGTGCCGCCATCCAATCGATTTGCCATAAAAACGTCAGCCCCGAATCATGGTTAACTCGGCC
ATTTCGTGCACCACACCATACTGCATCATCAGCGGCTCTGGTCGGTGGCGGCAGTCACCCTCAGCCCGGTGAAATTTCAT
TAGCACATAACGGTGTACTCTTTCTGGACGAATTGCCTGAATTCGAACGTAAAGTGCTCGATGTTTTACGTGAGCCGATG
GAGTCAGGTGAAGTCACCATATCACGTGCTCTACTCAAACAAACTTTTCCCGCACAGTTTCAACTTGTCGCCGCGATGAA
TCCAAGTCCAACCGGCTTTTACAATGACAAGCGCAGCACACCAGAGCAGGTTTTACGCTATCTCAATAGACTATCAGGAC
CTTTTCTAGATCGTATTGATATCCAAATTGAAGTCACTAGATTACCTCGAGGAATGTGGGCAAATGAAACGGAGAGAGGA
GAGTCTAGTAACACCATTCAAAAGCGAGTAAGCAAATGTTATCAGAAACAAATACAACGCCAAGGCAAGGTCAATGCGCA
GTTAGGCAGCGCTGAAGTCAGGAGCTACTGTCAACTCGACCCAGAGGATAATGAGTTTTTAGAGTTGGCTATCGAAAAGC
TCAACTTATCAACTCGAGCACACCATAAAATTTTAAAAATATCTAGAACACTTGCTGATATGGAGTCCGTCGATCACATA
GAACGAAAACACTTAATTGAAGCGCTATCCTATCGTGCTATGGACAGAATATTAAGACATTTAACCGATGCCATTGCTTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.805

100

0.569
  comM Haemophilus influenzae Rd KW20

56.299

100

0.565
  comM Vibrio cholerae strain A1552

56.548

99.605

0.563
  comM Glaesserella parasuis strain SC1401

54.941

100

0.549
  comM Legionella pneumophila str. Paris

48.893

98.221

0.48
  comM Legionella pneumophila strain ERS1305867

48.893

98.221

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.508

100

0.46

Multiple sequence alignment