Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGM04_RS12820 Genome accession   NZ_CP040717
Coordinates   2784773..2786287 (+) Length   504 a.a.
NCBI ID   WP_100647101.1    Uniprot ID   -
Organism   Aeromonas veronii strain HX3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2779773..2791287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGM04_RS12800 (FGM04_12815) - 2781510..2782454 (-) 945 WP_157161617.1 branched-chain amino acid transaminase -
  FGM04_RS12805 (FGM04_12820) ilvM 2782467..2782745 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  FGM04_RS12810 (FGM04_12825) ilvG 2782742..2784388 (-) 1647 WP_157161618.1 acetolactate synthase 2 catalytic subunit -
  FGM04_RS12820 (FGM04_12835) comM 2784773..2786287 (+) 1515 WP_100647101.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGM04_RS12825 (FGM04_12840) - 2786414..2787313 (+) 900 WP_005339610.1 acyltransferase -
  FGM04_RS12830 (FGM04_12845) - 2787320..2788285 (+) 966 WP_157161619.1 acyltransferase -
  FGM04_RS12835 (FGM04_12850) - 2788210..2788716 (-) 507 WP_157161620.1 DUF523 domain-containing protein -
  FGM04_RS12840 (FGM04_12855) - 2788713..2789363 (-) 651 WP_157161621.1 NrtR DNA-binding winged helix domain-containing protein -
  FGM04_RS12845 (FGM04_12860) - 2789438..2790073 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54579.47 Da        Isoelectric Point: 7.4493

>NTDB_id=366768 FGM04_RS12820 WP_100647101.1 2784773..2786287(+) (comM) [Aeromonas veronii strain HX3]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=366768 FGM04_RS12820 WP_100647101.1 2784773..2786287(+) (comM) [Aeromonas veronii strain HX3]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTACCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTCCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGTGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCAGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCAGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAAC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment