Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   M594_RS08990 Genome accession   NZ_CP047883
Coordinates   1887723..1888721 (-) Length   332 a.a.
NCBI ID   WP_023946759.1    Uniprot ID   A0A3B0BJZ5
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882723..1893721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08970 (M594_09010) eeP 1883975..1885234 (-) 1260 WP_173876619.1 RIP metalloprotease RseP Regulator
  M594_RS08975 (M594_09015) - 1885256..1886059 (-) 804 WP_049540615.1 phosphatidate cytidylyltransferase -
  M594_RS08980 (M594_09020) - 1886068..1886826 (-) 759 WP_004255202.1 isoprenyl transferase -
  M594_RS08985 (M594_09025) - 1887170..1887742 (-) 573 WP_173876620.1 nucleotidyltransferase family protein -
  M594_RS08990 (M594_09030) ruvB 1887723..1888721 (-) 999 WP_023946759.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M594_RS08995 (M594_09035) - 1888855..1888947 (+) 93 WP_084862780.1 type I toxin-antitoxin system Fst family toxin -
  M594_RS09000 (M594_09040) - 1889083..1889763 (-) 681 WP_254597147.1 ABC transporter permease -
  M594_RS09005 (M594_09045) - 1889812..1890552 (-) 741 WP_173876622.1 ABC transporter permease -
  M594_RS09010 (M594_09050) - 1890545..1891480 (-) 936 WP_173876623.1 ABC transporter ATP-binding protein -
  M594_RS09015 (M594_09055) slmA 1891638..1891820 (-) 183 WP_149561018.1 salivaricin M family lantibiotic -
  M594_RS09020 (M594_09060) - 1891975..1892274 (-) 300 WP_254597150.1 DUF5966 family protein -
  M594_RS09025 (M594_09065) - 1892288..1892590 (-) 303 WP_173876625.1 DUF5962 family protein -
  M594_RS09030 (M594_09070) - 1892647..1893375 (-) 729 WP_173876626.1 ABC transporter permease -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37252.72 Da        Isoelectric Point: 4.5018

>NTDB_id=366347 M594_RS08990 WP_023946759.1 1887723..1888721(-) (ruvB) [Streptococcus mitis strain S022-V3-A4]
MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIIGNGVID
DLITDKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYIEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=366347 M594_RS08990 WP_023946759.1 1887723..1888721(-) (ruvB) [Streptococcus mitis strain S022-V3-A4]
ATGAGTAGAATTTTAGATAATGAGATAATGGGGGACGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGGCAGGATAAGGTCAAGGACCAGCTTCAAATCTTTATAGAAGCTGCCAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTTTTATTTGGCCCTCCAGGCTTGGGAAAAACGACCATGGCTTTTGTTATTGCCAATGAACTAGGTGTCAATCTC
AAGCAGACTTCGGGTCCAGTCATTGAAAAAGCCGGTGATTTGGTAGCGATTTTGAATGACTTAGAGCCTGGGGATGTTCT
CTTTATTGATGAGATTCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCCATGGAGGACTTCTACATTGATA
TCATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCACCTTTCACTTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCGCTACGGGCACGTTTTGGAATTACAGGTCACATGGAGTATTATGCCCATGCTGACTTGAC
GGAAATTGTTGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAATTAGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAACGCGTGCGCGATTTTGCCCAGATTATAGGGAATGGGGTTATCGAT
GATCTTATTACTGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTCTGGACTATGTGGACCAGAAAATCCTTCG
CACCATGATTGAGATGTACGGTGGTGGTCCTGTTGGTCTAGGAACTCTTTCTGTTAACATAGCAGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCCTACTTGATTCAAAAAGGTTTTATCATGCGGACACGTTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCATTTAGGGTATGAATATATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B0BJZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

98.494

100

0.985
  ruvB Streptococcus pneumoniae R6

98.494

100

0.985
  ruvB Streptococcus pneumoniae D39

98.494

100

0.985
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.429

98.193

0.593
  ruvB Helicobacter pylori 26695

50.774

97.289

0.494
  ruvB Synechocystis sp. PCC 6803

48.193

100

0.482

Multiple sequence alignment