Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FGE23_RS05270 Genome accession   NZ_CP040672
Coordinates   1040538..1040828 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035538..1045828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS05230 darA 1035555..1035884 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  FGE23_RS05235 - 1035897..1036337 (+) 441 WP_004264730.1 YaaR family protein -
  FGE23_RS05240 holB 1036349..1037338 (+) 990 WP_128574753.1 DNA polymerase III subunit delta' -
  FGE23_RS05245 ricT 1037341..1038168 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  FGE23_RS05250 yabA 1038183..1038542 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  FGE23_RS05255 - 1038603..1039346 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FGE23_RS05260 - 1039333..1039632 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  FGE23_RS05265 rsmI 1039607..1040488 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FGE23_RS05270 abrB 1040538..1040828 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  FGE23_RS05275 metG 1041311..1043302 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  FGE23_RS05280 - 1043378..1044145 (+) 768 WP_032868379.1 TatD family hydrolase -
  FGE23_RS05285 - 1044280..1045605 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=366346 FGE23_RS05270 WP_169510469.1 1040538..1040828(-) (abrB) [Bacillus amyloliquefaciens strain X030]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=366346 FGE23_RS05270 WP_169510469.1 1040538..1040828(-) (abrB) [Bacillus amyloliquefaciens strain X030]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGTAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment