Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   M594_RS01415 Genome accession   NZ_CP047883
Coordinates   273544..275523 (+) Length   659 a.a.
NCBI ID   WP_173875774.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268544..280523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS01385 (M594_01410) - 268688..268918 (+) 231 WP_000250399.1 DUF1146 family protein -
  M594_RS01390 (M594_01415) murA 268942..270225 (+) 1284 WP_173875772.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M594_RS01395 (M594_01420) - 270218..270406 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  M594_RS01400 (M594_01425) endA 270445..271269 (+) 825 WP_000359015.1 DNA-entry nuclease EndA Machinery gene
  M594_RS01405 (M594_01430) - 271537..272868 (+) 1332 WP_173875773.1 hemolysin family protein -
  M594_RS01415 (M594_01440) amiA 273544..275523 (+) 1980 WP_173875774.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS01420 (M594_01445) amiC 275590..277086 (+) 1497 WP_124788148.1 ABC transporter permease Regulator
  M594_RS01425 (M594_01450) amiD 277086..278012 (+) 927 WP_124788147.1 oligopeptide ABC transporter permease OppC Regulator
  M594_RS01430 (M594_01455) amiE 278021..279088 (+) 1068 WP_173875775.1 ABC transporter ATP-binding protein Regulator
  M594_RS01435 (M594_01460) - 279099..280025 (+) 927 WP_124788145.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73090.25 Da        Isoelectric Point: 4.8801

>NTDB_id=366275 M594_RS01415 WP_173875774.1 273544..275523(+) (amiA) [Streptococcus mitis strain S022-V3-A4]
MKKSRVFVAAGVALLATGVLVACGNSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLTGNSKDFSTV
GIKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTVTLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGVGGLGVNIDRQNYKYTS
KTTDDEKTSTKKALLNKDFRQALNFAFDRTAYSAQVNGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVAEKVTTYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNYIARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNVTYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGMKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKASDVYFKYVQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=366275 M594_RS01415 WP_173875774.1 273544..275523(+) (amiA) [Streptococcus mitis strain S022-V3-A4]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCAACAGGTGTGTTAGTTGCTTGTGGAAATTCGAA
ATCATCTGATTCGACAGCGCCAAAAAATTATGGTTATGTTTATACAGCTGATCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACGAAAGTGGCTACTTCAAACGGAATCGATGGCCTCTTTACAAATGATAAATACGGGAACTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGATGGATTGACTTATACCTACAAAATTCGTAAAGGTGTAAAATGGATGAC
ATCTGATGGCGAAGAATATGCTGAAGTGACTGCTAAAGATTTCGTGAATGGATTGAAACATGCGGCAGATAAAAAATCAG
AAGCGCTTTACCTAGCTGAAACTTCTGTTAAAGGTCTATCTGACTATTTGACAGGTAATTCAAAAGATTTCTCTACAGTA
GGTATTAAAGCGGTTGATGATTATACTCTTGAGTATACTTTGAACCAACCAGAACCATACTGGAATTCTAAGATGGCTTA
CTCAATTTTCTGGCCGTTAAACGAAGAATTTGAAAAATCAAAAGGTTCTGATTTTGCTAAAGCAACAGATCCTACATCCT
TACTTTATAACGGACCTTTCTTGCTTAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAATGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGTCACACTTGCATACTTTGATGGTTCAGACCAAGAATCACTTGAACGTAATTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCGAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCATCAGGAGCTGGTGTTGGAGGTTTAGGTGTAAATATTGATCGTCAAAATTACAAATATACCTCT
AAAACAACAGATGATGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGATCGTACAGCTTATTCTGCTCAAGTTAACGGTAAAGAAGGCGCTCCTCTAGCAGTTCGTAATCTATTTGTGAAACCGG
ACTTTGTTTCTGCGGGTGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTACGACTTATGGAGACGAGTGGAAAAAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGAGTGAAATTCCCTATCCATTTGGATGTTCCAGTAGACCAAACGTCTAAAAACTATATCGCACGTATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGTGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGTGACTTATTATGCTGCTAATGCGGCGGCTGAGGATTGGGATCTTTCAGGTGCTGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTATCTTGACATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGCTATGATG
ACCCATCAAATGCAGCTGCGGCAAAAGTTGGTATGAAAGATTACGATAAATTGCTCGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAGCGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGCTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTTATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGATAAAGCTTCAG
ATGTCTACTTCAAATATGTTCAGTTACAAGATAAGGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.982

100

0.68
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677