Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   M594_RS01420 Genome accession   NZ_CP047883
Coordinates   275590..277086 (+) Length   498 a.a.
NCBI ID   WP_124788148.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 270590..282086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS01405 (M594_01430) - 271537..272868 (+) 1332 WP_173875773.1 hemolysin family protein -
  M594_RS01415 (M594_01440) amiA 273544..275523 (+) 1980 WP_173875774.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS01420 (M594_01445) amiC 275590..277086 (+) 1497 WP_124788148.1 ABC transporter permease Regulator
  M594_RS01425 (M594_01450) amiD 277086..278012 (+) 927 WP_124788147.1 oligopeptide ABC transporter permease OppC Regulator
  M594_RS01430 (M594_01455) amiE 278021..279088 (+) 1068 WP_173875775.1 ABC transporter ATP-binding protein Regulator
  M594_RS01435 (M594_01460) - 279099..280025 (+) 927 WP_124788145.1 ATP-binding cassette domain-containing protein -
  M594_RS01440 (M594_01465) - 280116..281555 (-) 1440 WP_173875776.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55653.08 Da        Isoelectric Point: 9.4257

>NTDB_id=366276 M594_RS01420 WP_124788148.1 275590..277086(+) (amiC) [Streptococcus mitis strain S022-V3-A4]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
KLDSSVTVDANDSNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNVNLGDSYPTYANTPVLQVITQGQGQTKTGQVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKNDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=366276 M594_RS01420 WP_124788148.1 275590..277086(+) (amiC) [Streptococcus mitis strain S022-V3-A4]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTAACCTACACGATTAT
CTATACGATGGTACCTCGTAAATTGATTTTTAAACAGGATACCAACTATAATAAGATTGCAACCACTCCAGATAAACGGG
ATAACTATGAAAATACTGTTTATGAGCGTATGGGCTATATCGAGTATTACGATACCAAGGAGCTGCAAGAAAAAGCTAGT
AAATTAGACTCATCGGTAACAGTTGATGCTAATGATAGCAATAAAGCGATTTATGAAAAATACATTAATCAATTAGGTAA
TGGTTGGACACTAGGTGTATTTTCAGAGAGTGGTCAGTTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATGCTAACTTGCTTGATATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTAGAACGCTATCTT
CGCTTTGAAAATGACCCTGCTATCGGCTGGTCGTTGGTTGGTTCAGGTACAAAACATAAGTATCTGTTGTATTTTAACAA
CCAATTCCCATTTGTACACCAAAACTTTGTGAATGTTAATTTAGGTGATTCTTACCCAACTTATGCAAACACTCCCGTAC
TTCAAGTCATTACACAAGGTCAAGGACAAACAAAGACTGGACAAGTTCAATTCCCTACTGGTAAGAAGACTTCATCTGTA
GATATTTACTCACGTACTTATAAATCACCTAGTCAGGCAGACGCTCGTGAGGTAGCCAACTATGGTAAAAATGATCCGTA
TACAGCTACAGAGAGCAACTATCAGTATCCATCAATGATTGCAAGCTCTGCTGTTGCTGGATTAATTGGTTTGATTATTT
CGTATGCTATTGCAATCCCTCTTGGGTCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCTTTGGTTTATATTGTTCGTTTGATTGGATCATCTATTGGTCTTCCAGA
TTCGTTCCCTATCTTGGGTGCTGGAGATTGGCGTTCTTATGTTTTGCCAGCAGTTATTCTAGGATTGCTAGGAGCACCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGATTTGCAATCTCAAGACTTCGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACATATCTTTAAAAACGCAATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTTAT
CGGGGTTATCGGTGGTGCAACTCTTACTGAAACAGTTTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCGTCAAATAACTCGATGGTAGTTGGTCTTGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGGGAT
ATCTGGATGACAATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.506

100

0.765