Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   M594_RS01425 Genome accession   NZ_CP047883
Coordinates   277086..278012 (+) Length   308 a.a.
NCBI ID   WP_124788147.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272086..283012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS01415 (M594_01440) amiA 273544..275523 (+) 1980 WP_173875774.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS01420 (M594_01445) amiC 275590..277086 (+) 1497 WP_124788148.1 ABC transporter permease Regulator
  M594_RS01425 (M594_01450) amiD 277086..278012 (+) 927 WP_124788147.1 oligopeptide ABC transporter permease OppC Regulator
  M594_RS01430 (M594_01455) amiE 278021..279088 (+) 1068 WP_173875775.1 ABC transporter ATP-binding protein Regulator
  M594_RS01435 (M594_01460) - 279099..280025 (+) 927 WP_124788145.1 ATP-binding cassette domain-containing protein -
  M594_RS01440 (M594_01465) - 280116..281555 (-) 1440 WP_173875776.1 TrkH family potassium uptake protein -
  M594_RS01445 (M594_01470) trkA 281559..282908 (-) 1350 WP_173875777.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34619.63 Da        Isoelectric Point: 9.0162

>NTDB_id=366277 M594_RS01425 WP_124788147.1 277086..278012(+) (amiD) [Streptococcus mitis strain S022-V3-A4]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVAMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLIIGVIVGGIWGISKSVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=366277 M594_RS01425 WP_124788147.1 277086..278012(+) (amiD) [Streptococcus mitis strain S022-V3-A4]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACGATTGATGCACCAGCTTA
TTCATACTGGGGATCTGTCTTCAGACAGTTTTTGAAGAAAAAATCGACAGTTGCTATGCTAGGTATTTTGGTCGCTATTA
TTTTAATGAGCTTTATTTACCCAATGTTCTCAGATTTTGATTTCAACGATGTAAGTAAGGTAAATGACTTCAGTGCTCGC
TTTATCAAGCCTAACGCTGAACATTGGTTTGGTACAGATAGTAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCTACTTTTATTAACCTTATAATTGGTGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGTATCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTTATTGTC
TTGACGTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTATCGTGATTTAGAATACAACCTCGCTTCTCAAACTCTTGGAACACCTACCTTTAAAA
TCATCGTCAAAAATATCATGCCACAATTGGTATCTGTTATTGTATCTACAATGACATTGATGTTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTAGGACTACCTGTGACAGTTCCAAGTTTGGGACGTTTGATTTCAGACTATTC
ACAAAATGTTACGACCAACGCTTACCTGTTCTGGATTCCATTAACAACATTGATTTTGGTATCCTTATCTCTCTTTGTTG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.468

100

0.825
  amiD Streptococcus thermophilus LMD-9

82.468

100

0.825

Multiple sequence alignment