Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ELLBI42_RS01440 | Genome accession | NZ_CP040606 |
| Coordinates | 304917..305444 (+) | Length | 175 a.a. |
| NCBI ID | WP_014168221.1 | Uniprot ID | - |
| Organism | Enterobacter ludwigii strain I42 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 299917..310444
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELLBI42_RS01420 (ELLBI42_01420) | aphA | 300240..300953 (+) | 714 | WP_014168217.1 | acid phosphatase AphA | - |
| ELLBI42_RS01425 (ELLBI42_01425) | - | 301067..301483 (+) | 417 | WP_014168218.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ELLBI42_RS01430 (ELLBI42_01430) | - | 301486..301839 (+) | 354 | WP_014168219.1 | MmcQ/YjbR family DNA-binding protein | - |
| ELLBI42_RS01435 (ELLBI42_01435) | uvrA | 301843..304665 (-) | 2823 | WP_014168220.1 | excinuclease ABC subunit UvrA | - |
| ELLBI42_RS01440 (ELLBI42_01440) | ssb | 304917..305444 (+) | 528 | WP_014168221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ELLBI42_RS01445 (ELLBI42_01445) | - | 305508..305789 (-) | 282 | WP_020882839.1 | YjcB family protein | - |
| ELLBI42_RS01450 (ELLBI42_01450) | - | 306279..307679 (+) | 1401 | WP_050737727.1 | sensor domain-containing diguanylate cyclase | - |
| ELLBI42_RS01455 (ELLBI42_01455) | - | 308019..309584 (+) | 1566 | WP_025206387.1 | EAL domain-containing protein | - |
| ELLBI42_RS01460 (ELLBI42_01460) | soxS | 309591..309917 (-) | 327 | WP_013095071.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18735.76 Da Isoelectric Point: 5.2456
>NTDB_id=365530 ELLBI42_RS01440 WP_014168221.1 304917..305444(+) (ssb) [Enterobacter ludwigii strain I42]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=365530 ELLBI42_RS01440 WP_014168221.1 304917..305444(+) (ssb) [Enterobacter ludwigii strain I42]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.783 |
| ssb | Glaesserella parasuis strain SC1401 |
56.757 |
100 |
0.6 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.474 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35 |
100 |
0.36 |