Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FFU37_RS14135 Genome accession   NZ_CP040558
Coordinates   3156645..3158156 (-) Length   503 a.a.
NCBI ID   WP_039488984.1    Uniprot ID   A0A4P9J3L3
Organism   Pseudoalteromonas distincta strain 16-SW-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3151645..3163156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFU37_RS14120 (FFU37_14120) - 3152071..3153147 (-) 1077 WP_002957910.1 hemolysin family protein -
  FFU37_RS14125 (FFU37_14125) - 3153232..3155727 (+) 2496 WP_138489756.1 S9 family peptidase -
  FFU37_RS14130 (FFU37_14130) - 3155944..3156648 (+) 705 WP_002957913.1 response regulator transcription factor -
  FFU37_RS14135 (FFU37_14135) comM 3156645..3158156 (-) 1512 WP_039488984.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FFU37_RS14140 (FFU37_14140) - 3158191..3158805 (-) 615 WP_002957915.1 trimeric intracellular cation channel family protein -
  FFU37_RS14160 (FFU37_14160) cysQ 3159953..3160756 (-) 804 WP_138489757.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FFU37_RS14165 (FFU37_14165) nudE 3160749..3161321 (-) 573 WP_039488983.1 ADP compounds hydrolase NudE -
  FFU37_RS14170 (FFU37_14170) yrfG 3161383..3162030 (+) 648 WP_007378908.1 GMP/IMP nucleotidase -
  FFU37_RS14175 (FFU37_14175) - 3162046..3162669 (-) 624 WP_002963012.1 dUTP diphosphatase -
  FFU37_RS14180 (FFU37_14180) - 3162750..3163118 (-) 369 WP_002963010.1 YacL family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55113.12 Da        Isoelectric Point: 6.8248

>NTDB_id=365207 FFU37_RS14135 WP_039488984.1 3156645..3158156(-) (comM) [Pseudoalteromonas distincta strain 16-SW-7]
MSLARIFSRAQVGINAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGVLVASGQIVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEEDRCCFLPLANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAISTAALYSIIGQSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSTKPEE
TSAEVRARVEAAYYVQLKRQGKVNARLNNKEMSVHCELAPAELQFLARASEKLSLSPRSYHRVIKVARTISDLKGAENIS
LNELKEALNYRAFERLIAQLTKY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=365207 FFU37_RS14135 WP_039488984.1 3156645..3158156(-) (comM) [Pseudoalteromonas distincta strain 16-SW-7]
ATGTCGTTAGCTCGTATATTTTCTCGTGCTCAAGTGGGTATAAATGCCCCTGAAGTTATTGTAGAAGTTCACCTAGGAAA
TGGTTTACCCGCTTTTCATATTGTAGGTCTGCCCGAAGCGTCTGTTAAAGAGTCGAAAGACAGGGTACGTAGCGCACTCG
AAAACTCACAATTTGGTTTTCCCGATCAACGAATAACTGTAAATTTAGCCCCAGCCGACTTGCCAAAAGATGGAGGGCGG
TTTGATCTGGCTATTGCGGTGGGAGTTTTAGTCGCCTCTGGGCAAATAGTGTGTCCTGATATTCATAAGTACGAGTTTTA
TGGTGAGCTTGCTCTTAATGGTGAAGTGCGTGGTGTAAACGCTATTTTACCTTCGGTACTTGCTGCTAAAGAAGAAGATC
GCTGCTGCTTTTTACCTCTTGCAAACGACAGCCTAGCAAGCCTAGTTAATGGCGTTAAACGCAAAGCCGTAAGCTCTATT
CAAGAAGTATGGGGCGACCTACTTAATCAACAACCCTTGCCATTAAATATAGAGTACCCCGACTGCACGCAAGCCCCTGA
CTTTTTGCTCGATTTAAGCGATGTTAAAGGTCAGCCCGGTGCAAAGCGAGTACTCGAAATTGCTGCAGCTGGCGGGCATA
ATTTACTATTTTTAGGCCCTCCTGGTACTGGTAAATCAATGCTGGCCCAGCGAATGGCTACTATAATGCCCACTATGTCG
GACGATGAAGCTATTTCAACAGCTGCGCTTTACTCTATTATTGGACAATCCATAGATTTAACTAATTGGCGACAGCGGCC
ATTTCGTAATCCGCATCATACGTGCTCAGCTGTTGCTTTGGTGGGGGGGTCTTCAAATCCCAAGCCTGGTGAAATTTCGC
TGGCACATAACGGTGTGCTCTTCTTAGATGAGTTACCGGAATTCGAGCGTAAGGTGCTTGATTCACTGCGTGAACCAATG
GAGACCGGTACGGTTACTATTTCACGTGCAGCTAGGCAAATGGAGTTCCCAGCGCAGTTTCAGCTTATTACAGCATTAAA
CCCAAGCCCAACAGGGAGCCATACTGATAAGCGGGCAACTCCCGATCAAGTTATGCGTTATTTATCACGCGTGTCGGGGC
CTTTTATTGACCGTATAGATTTGCAAATAGAACTACCTCGTTTAACGAGTGTTGAGCTACAAAGTACCAAACCAGAGGAA
ACCAGTGCTGAGGTTAGAGCAAGAGTTGAGGCTGCTTATTATGTGCAGCTAAAACGCCAAGGTAAGGTTAATGCGAGACT
TAATAATAAAGAAATGAGTGTGCACTGTGAACTTGCGCCTGCAGAGTTGCAATTTTTAGCTAGAGCAAGCGAGAAGTTGT
CTTTATCGCCACGCTCCTACCATAGAGTAATTAAGGTGGCGCGTACAATTAGTGATTTAAAAGGCGCTGAAAACATTAGT
TTAAATGAGCTTAAAGAAGCACTTAATTACCGCGCATTTGAGCGCCTTATTGCGCAATTAACTAAGTATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P9J3L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

100

0.557
  comM Haemophilus influenzae Rd KW20

53.543

100

0.541
  comM Vibrio campbellii strain DS40M4

53.77

100

0.539
  comM Glaesserella parasuis strain SC1401

53.162

100

0.535
  comM Legionella pneumophila str. Paris

49.899

98.807

0.493
  comM Legionella pneumophila strain ERS1305867

49.899

98.807

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

100

0.425

Multiple sequence alignment