Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BV455_RS10490 Genome accession   NZ_CP040553
Coordinates   2078908..2079579 (+) Length   223 a.a.
NCBI ID   WP_061579106.1    Uniprot ID   A0A150LXC9
Organism   Saccharococcus caldoxylosilyticus strain ER4B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073908..2084579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV455_RS10470 (BV455_02121) - 2074493..2075695 (+) 1203 WP_061579109.1 sensor histidine kinase -
  BV455_RS10475 (BV455_02122) - 2075670..2076347 (+) 678 WP_017436409.1 response regulator -
  BV455_RS10480 (BV455_02123) - 2076501..2077346 (+) 846 WP_042408151.1 DegV family protein -
  BV455_RS10485 (BV455_02124) - 2077415..2078911 (+) 1497 WP_280638345.1 DEAD/DEAH box helicase -
  BV455_RS10490 (BV455_02125) comFC 2078908..2079579 (+) 672 WP_061579106.1 ComF family protein Machinery gene
  BV455_RS10495 (BV455_02126) - 2079659..2082058 (+) 2400 WP_245005273.1 hypothetical protein -
  BV455_RS10500 (BV455_02127) - 2082055..2082342 (+) 288 WP_061579104.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  BV455_RS10505 (BV455_02128) fliS 2082400..2082828 (+) 429 WP_061579103.1 flagellar export chaperone FliS -
  BV455_RS10510 (BV455_02129) - 2082849..2083676 (+) 828 WP_061579102.1 flagellin -
  BV455_RS10515 (BV455_02130) - 2083765..2084202 (+) 438 WP_061579101.1 YaaR family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26389.32 Da        Isoelectric Point: 9.0036

>NTDB_id=365167 BV455_RS10490 WP_061579106.1 2078908..2079579(+) (comFC) [Saccharococcus caldoxylosilyticus strain ER4B]
MKCLLCHETFYPPFTFRYFLTLQQEDPVCPRCRQRFSLIEEPICERCGRPYREPLCEDCKTWKTIGNALEKNRSVYQYNE
WMQEVFARFKFRGDYVIAEAFRADFTNAFFRHFSRNVLLVPIPLSKERLIERGFNQAEALASFLPLPLWNALERRDHEKQ
SKKQKRERLTAPQFYVKDSKQIEGKDIVLIDDIYTTGATVYHAATQLRRYGASSVSSFTLIRA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=365167 BV455_RS10490 WP_061579106.1 2078908..2079579(+) (comFC) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGAAATGTTTGCTTTGTCATGAAACATTTTATCCGCCGTTTACGTTTCGCTATTTTTTAACTTTGCAACAGGAAGATCC
CGTCTGCCCGCGCTGCCGCCAGCGCTTTTCGCTCATCGAAGAACCAATTTGCGAGCGTTGCGGCCGTCCATATCGAGAGC
CATTGTGCGAGGATTGCAAAACATGGAAGACGATTGGCAATGCGTTAGAGAAAAATCGTTCTGTTTACCAGTACAATGAG
TGGATGCAAGAAGTATTTGCCCGCTTTAAATTTCGCGGTGATTACGTGATTGCTGAAGCGTTCCGAGCGGACTTTACAAA
CGCGTTTTTTCGCCATTTTTCCCGAAATGTCTTGCTTGTTCCGATTCCTTTAAGCAAGGAGCGCCTCATCGAACGAGGGT
TTAACCAAGCCGAAGCGCTTGCATCGTTTCTTCCGCTCCCTTTATGGAACGCGCTTGAGCGTCGCGATCATGAAAAACAG
TCGAAAAAACAGAAAAGAGAACGGCTTACCGCTCCGCAATTTTATGTCAAAGATAGCAAACAAATTGAGGGAAAAGACAT
TGTCTTAATCGATGACATTTACACCACAGGCGCAACCGTTTATCATGCCGCAACGCAGCTTCGTCGGTATGGAGCGAGTT
CTGTATCGTCTTTTACGTTAATTCGCGCGTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-59)

Phosphoribosyl transferase domain (Pribosyltran)

(132-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150LXC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

47.577

100

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

36.607

100

0.368
  comFC/cflB Streptococcus pneumoniae D39

36.607

100

0.368
  comFC/cflB Streptococcus pneumoniae R6

36.607

100

0.368
  comFC/cflB Streptococcus pneumoniae TIGR4

36.607

100

0.368
  comFC/cflB Streptococcus mitis NCTC 12261

36.161

100

0.363
  comFC/cflB Streptococcus mitis SK321

36.161

100

0.363

Multiple sequence alignment