Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | BV455_RS08900 | Genome accession | NZ_CP040553 |
| Coordinates | 1735049..1735543 (+) | Length | 164 a.a. |
| NCBI ID | WP_017435781.1 | Uniprot ID | A0A023DB50 |
| Organism | Saccharococcus caldoxylosilyticus strain ER4B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1730049..1740543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV455_RS08885 (BV455_01800) | - | 1731432..1733444 (+) | 2013 | WP_218687923.1 | molybdopterin-dependent oxidoreductase | - |
| BV455_RS08890 (BV455_01801) | ychF | 1733523..1734623 (+) | 1101 | WP_017435779.1 | redox-regulated ATPase YchF | - |
| BV455_RS08895 (BV455_01802) | rpsF | 1734732..1735019 (+) | 288 | WP_017435780.1 | 30S ribosomal protein S6 | - |
| BV455_RS08900 (BV455_01803) | ssbA | 1735049..1735543 (+) | 495 | WP_017435781.1 | single-stranded DNA-binding protein | Machinery gene |
| BV455_RS08905 (BV455_01804) | rpsR | 1735600..1735836 (+) | 237 | WP_013401907.1 | 30S ribosomal protein S18 | - |
| BV455_RS08910 (BV455_01805) | - | 1735915..1736841 (+) | 927 | WP_017435782.1 | YybS family protein | - |
| BV455_RS08915 (BV455_01806) | - | 1736888..1738864 (+) | 1977 | WP_017435783.1 | DHH family phosphoesterase | - |
| BV455_RS08920 (BV455_01807) | rplI | 1738861..1739310 (+) | 450 | WP_017435784.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18427.32 Da Isoelectric Point: 4.6052
>NTDB_id=365156 BV455_RS08900 WP_017435781.1 1735049..1735543(+) (ssbA) [Saccharococcus caldoxylosilyticus strain ER4B]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSTEQRGTATGGYFGEPFPFGPDQNHRNPNERDFSRIDEDPFANDGQPIDISDD
DLPF
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSTEQRGTATGGYFGEPFPFGPDQNHRNPNERDFSRIDEDPFANDGQPIDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=365156 BV455_RS08900 WP_017435781.1 1735049..1735543(+) (ssbA) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGATTAACCGCGTAATTCTCGTTGGGAGATTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
TACGTTTACGCTTGCTGTCAATCGCCCGTTTACCAATCAGCAAGGCGAACGGGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGACGTCAAGCGGAGAATGTTGCGAATTTCTTAAAAAAAGGAAGTTTAGCCGGAGTCGATGGCCGTTTACAGACCCGT
AGCTATGAAGGTCAAGACGGAAGACGTGTATATGTAACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAACCGAAAAG
TAGCACTGAACAGCGTGGGACGGCAACAGGCGGCTACTTTGGGGAGCCATTCCCATTTGGACCAGATCAGAACCATCGCA
ATCCGAATGAAAGAGATTTTAGTCGCATAGATGAAGATCCTTTTGCCAACGACGGTCAACCGATCGATATTTCGGATGAT
GATTTGCCGTTTTAG
ATGATTAACCGCGTAATTCTCGTTGGGAGATTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
TACGTTTACGCTTGCTGTCAATCGCCCGTTTACCAATCAGCAAGGCGAACGGGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGACGTCAAGCGGAGAATGTTGCGAATTTCTTAAAAAAAGGAAGTTTAGCCGGAGTCGATGGCCGTTTACAGACCCGT
AGCTATGAAGGTCAAGACGGAAGACGTGTATATGTAACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAACCGAAAAG
TAGCACTGAACAGCGTGGGACGGCAACAGGCGGCTACTTTGGGGAGCCATTCCCATTTGGACCAGATCAGAACCATCGCA
ATCCGAATGAAAGAGATTTTAGTCGCATAGATGAAGATCCTTTTGCCAACGACGGTCAACCGATCGATATTTCGGATGAT
GATTTGCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
67.241 |
100 |
0.713 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.588 |
100 |
0.628 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
63.208 |
64.634 |
0.409 |
| ssb | Glaesserella parasuis strain SC1401 |
34.254 |
100 |
0.378 |
| ssb | Vibrio cholerae strain A1552 |
33.708 |
100 |
0.366 |