Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FE240_RS00035 Genome accession   NZ_CP040449
Coordinates   7778..9289 (+) Length   503 a.a.
NCBI ID   WP_193002881.1    Uniprot ID   A0A5J6WQ94
Organism   Aeromonas simiae strain A6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2778..14289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE240_RS00020 (FE240_00020) - 4545..5468 (-) 924 WP_193002880.1 branched-chain amino acid transaminase -
  FE240_RS00025 (FE240_00025) ilvM 5480..5743 (-) 264 WP_042048977.1 acetolactate synthase 2 small subunit -
  FE240_RS00030 (FE240_00030) ilvG 5740..7386 (-) 1647 WP_193004363.1 acetolactate synthase 2 catalytic subunit -
  FE240_RS00035 (FE240_00040) comM 7778..9289 (+) 1512 WP_193002881.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FE240_RS00040 (FE240_00045) - 9353..10249 (+) 897 WP_193002882.1 acyltransferase -
  FE240_RS00045 (FE240_00050) - 10257..11192 (+) 936 WP_193002883.1 acyltransferase -
  FE240_RS00050 (FE240_00055) - 11150..11608 (-) 459 WP_193002884.1 DUF523 domain-containing protein -
  FE240_RS00055 (FE240_00060) - 11605..12255 (-) 651 WP_193002885.1 NrtR DNA-binding winged helix domain-containing protein -
  FE240_RS00060 (FE240_00065) - 12332..12958 (+) 627 WP_193002886.1 nicotinamidase -
  FE240_RS00065 (FE240_00070) pncB 12960..14138 (+) 1179 WP_042048984.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53955.81 Da        Isoelectric Point: 7.3615

>NTDB_id=364546 FE240_RS00035 WP_193002881.1 7778..9289(+) (comM) [Aeromonas simiae strain A6]
MSLAVVYSRASLGVEAPLVTVEVHLSNGLPAFNIVGLPETSVKESRDRVRSALLNGNFEFPARRITVNLAPADLPKEGGR
FDLAIALGILAASQQIPANSLPDHEFLGELALTGELRPVLGVLPAVLASRAAGRTLVVARDNGAEAALIRDAQVRCAHQL
LAVTAWISGQLALPFPEPATPESDGHEVPDLLDVIGQSQAKRALEIAAAGCHHLLLIGPPGTGKSMLASRLSGILPPLSE
AEAQESAAIHSIGGHGLSGWGRRPYRCPHHSASAVALVGGGSQPRPGEISLAHNGVLFLDELPEFERKVLDNLREPLESG
HITISRAARQVDFPASFQLVAAMNPSPCGHYGDGQTRSTPEQVLRYLGRLSGPFLDRFDLTVEVPLLPKGSLSGTPERGE
CSAVVRERVVAARQRMLARSGKLNQRLDSREIEEVCRLSPQDADFLEGAIQRLGLSIRAWHRILRVARTIADLAGEGTID
RRHLVEALGYRAMDRLLLRLRGT

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=364546 FE240_RS00035 WP_193002881.1 7778..9289(+) (comM) [Aeromonas simiae strain A6]
ATGTCATTAGCTGTGGTTTACAGCCGGGCCAGCCTGGGTGTCGAGGCACCGCTGGTTACGGTGGAGGTTCATCTCTCCAA
TGGTCTGCCGGCCTTCAATATCGTCGGTTTGCCCGAGACCTCGGTGAAGGAGTCGCGCGATCGGGTGCGCAGTGCCCTGC
TCAACGGTAACTTCGAGTTTCCTGCCCGCCGCATCACGGTCAACCTGGCGCCGGCCGATCTTCCCAAGGAGGGCGGCCGC
TTCGATCTGGCCATCGCGCTCGGCATTCTGGCGGCCTCACAGCAGATACCGGCGAACAGCCTGCCAGATCATGAATTCTT
GGGGGAGCTGGCCCTGACGGGGGAGCTGCGCCCGGTTCTTGGTGTGCTGCCGGCGGTACTGGCCAGCCGCGCCGCCGGAC
GCACCCTGGTGGTCGCGCGTGACAATGGCGCCGAGGCCGCATTGATCCGCGATGCGCAGGTGCGCTGCGCGCATCAGTTA
CTGGCGGTGACCGCCTGGATCTCGGGGCAGTTGGCGTTGCCTTTTCCCGAGCCGGCTACGCCGGAAAGCGATGGCCACGA
AGTGCCCGATTTACTCGATGTCATTGGTCAGTCCCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCTGCCATCACC
TGCTGCTCATTGGGCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGGTTATCTGGCATCCTGCCCCCCCTGAGTGAG
GCTGAGGCGCAAGAGAGCGCTGCCATTCACTCCATCGGTGGGCACGGGCTCTCTGGTTGGGGTCGGCGTCCCTATCGCTG
CCCGCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTAGTCAACCGAGGCCTGGTGAGATTTCACTTGCCCACA
ATGGCGTGCTGTTTTTAGACGAATTGCCCGAGTTTGAACGCAAGGTGCTCGACAATCTGCGTGAGCCACTCGAGAGCGGC
CACATCACCATCAGCAGGGCGGCTAGGCAGGTGGATTTTCCCGCCTCTTTCCAGCTGGTGGCGGCCATGAACCCCAGCCC
CTGCGGCCACTATGGCGATGGTCAGACCCGCTCTACGCCGGAGCAAGTGCTGCGGTATCTCGGTCGCCTGTCGGGCCCCT
TTCTCGATCGCTTCGATCTGACGGTGGAGGTCCCGCTGCTGCCCAAGGGGAGCTTAAGCGGTACGCCGGAGCGGGGGGAG
TGCAGCGCTGTGGTGCGAGAGCGGGTCGTGGCGGCGCGCCAGCGTATGCTTGCCCGCAGTGGCAAGCTCAATCAGCGTCT
GGATAGTCGGGAGATCGAAGAAGTTTGTCGCTTATCGCCGCAAGATGCGGACTTTCTTGAGGGTGCCATCCAGCGGCTTG
GTCTCAGCATTCGAGCCTGGCATCGGATTCTGAGGGTGGCGCGCACCATCGCCGATCTGGCGGGCGAGGGGACGATAGAC
CGTCGTCATCTGGTGGAGGCGCTTGGTTATCGGGCCATGGATCGCCTGTTGTTACGGCTTCGTGGCACATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6WQ94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.801

0.632
  comM Vibrio campbellii strain DS40M4

63.022

100

0.63
  comM Haemophilus influenzae Rd KW20

61.858

100

0.622
  comM Glaesserella parasuis strain SC1401

60.707

100

0.614
  comM Legionella pneumophila str. Paris

51.406

99.006

0.509
  comM Legionella pneumophila strain ERS1305867

51.406

99.006

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.168

100

0.455

Multiple sequence alignment