Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FEM41_RS07300 | Genome accession | NZ_CP040428 |
| Coordinates | 1587466..1588008 (+) | Length | 180 a.a. |
| NCBI ID | WP_138095350.1 | Uniprot ID | A0A4V1G7F5 |
| Organism | Jejubacter calystegiae strain KSNA2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1582466..1593008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEM41_RS24745 | - | 1583609..1584019 (+) | 411 | Protein_1411 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| FEM41_RS24750 | - | 1584059..1584385 (+) | 327 | WP_241666623.1 | MmcQ/YjbR family DNA-binding protein | - |
| FEM41_RS07295 (FEM41_07295) | uvrA | 1584432..1587263 (-) | 2832 | WP_138095349.1 | excinuclease ABC subunit UvrA | - |
| FEM41_RS07300 (FEM41_07300) | ssb | 1587466..1588008 (+) | 543 | WP_138095350.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| FEM41_RS07305 (FEM41_07305) | - | 1588106..1588726 (-) | 621 | WP_138095351.1 | LysE family translocator | - |
| FEM41_RS07310 (FEM41_07310) | - | 1588858..1589625 (-) | 768 | WP_138095352.1 | SDR family oxidoreductase | - |
| FEM41_RS07315 (FEM41_07315) | - | 1589816..1590724 (+) | 909 | WP_138095353.1 | AraC family transcriptional regulator | - |
| FEM41_RS07320 (FEM41_07320) | - | 1591181..1592692 (+) | 1512 | WP_138095354.1 | GGDEF domain-containing protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19307.29 Da Isoelectric Point: 5.2358
>NTDB_id=364323 FEM41_RS07300 WP_138095350.1 1587466..1588008(+) (ssb) [Jejubacter calystegiae strain KSNA2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQGQDGQDRYTTEVVVNVGGSMQMLGGRQGGGGGMGGGQQQGGGWGQPQQPQGGNQFSGGGQQQAQSRPQQQ
NSAPAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQGQDGQDRYTTEVVVNVGGSMQMLGGRQGGGGGMGGGQQQGGGWGQPQQPQGGNQFSGGGQQQAQSRPQQQ
NSAPAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=364323 FEM41_RS07300 WP_138095350.1 1587466..1588008(+) (ssb) [Jejubacter calystegiae strain KSNA2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTGCGCTATATGCCAAATGG
CGGGGCCGTGGCTAACCTGCGGCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACTCCGTAGTGCTGTTTGGCAAACTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGCCAGTTGCGTACCCGCAAATGGCAGGGGCAGGATGGCCAGGATCGTTACACCACCGAAGTCGTGGTTAACGTGGG
CGGCTCCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGTGGCGGCATGGGCGGCGGCCAGCAGCAGGGCGGTGGCTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGGTCAGCAGCAGGCTCAGTCTCGTCCTCAGCAGCAG
AACAGTGCACCGGCACCTTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTGCGCTATATGCCAAATGG
CGGGGCCGTGGCTAACCTGCGGCTGGCGACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACTCCGTAGTGCTGTTTGGCAAACTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGCCAGTTGCGTACCCGCAAATGGCAGGGGCAGGATGGCCAGGATCGTTACACCACCGAAGTCGTGGTTAACGTGGG
CGGCTCCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGTGGCGGCATGGGCGGCGGCCAGCAGCAGGGCGGTGGCTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGGTCAGCAGCAGGCTCAGTCTCGTCCTCAGCAGCAG
AACAGTGCACCGGCACCTTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.892 |
100 |
0.722 |
| ssb | Glaesserella parasuis strain SC1401 |
58.73 |
100 |
0.617 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.478 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
100 |
0.467 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.079 |
98.889 |
0.367 |