Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FEM41_RS06495 Genome accession   NZ_CP040428
Coordinates   1410746..1412266 (-) Length   506 a.a.
NCBI ID   WP_138095211.1    Uniprot ID   A0A4V1G7E1
Organism   Jejubacter calystegiae strain KSNA2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405746..1417266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEM41_RS06485 (FEM41_06485) hdfR 1409438..1410259 (-) 822 WP_138095209.1 HTH-type transcriptional regulator HdfR -
  FEM41_RS06490 (FEM41_06490) - 1410379..1410717 (+) 339 WP_138095210.1 DUF413 domain-containing protein -
  FEM41_RS06495 (FEM41_06495) comM 1410746..1412266 (-) 1521 WP_138095211.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FEM41_RS06500 (FEM41_06500) ilvL 1412606..1412704 (+) 99 WP_138095212.1 ilv operon leader peptide -
  FEM41_RS06505 (FEM41_06505) ilvG 1412846..1414492 (+) 1647 WP_138095213.1 acetolactate synthase 2 catalytic subunit -
  FEM41_RS06510 (FEM41_06510) ilvM 1414489..1414746 (+) 258 WP_138095214.1 acetolactate synthase 2 small subunit -
  FEM41_RS06515 (FEM41_06515) - 1414767..1415702 (+) 936 WP_138095215.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55519.92 Da        Isoelectric Point: 8.5140

>NTDB_id=364321 FEM41_RS06495 WP_138095211.1 1410746..1412266(-) (comM) [Jejubacter calystegiae strain KSNA2]
MTLSIIHTRAALGITAPQVTVEAHISQGLPGLTMVGLPETTVKEARDRVRSAIINSGYQFPARKITLNLAPADLPKEGGR
FDLPIALALLAASEQLCIRHPERYEFLGELALTGALRGVPGAISGAMEGLRAGRQVIVAAENEDEVGLIGKPGCFIAHQL
ADVCAFLEGKTILPEPRAPHLPHINEHRDLCDIIGQSQGKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLSNT
EALESAAILSLVSPHSLHQQWRQRPFRAPHHSASMTALVGGGSMPGPGEISLAHNGILFLDELPEFSRRVLEALREPIES
GEIIISRTRAKVRYPARFQLIAAMNPSPSGDWQGNQSHGGLQQTLRYINRLSGPFLDRFDMSLEIPLLPPGTLSGQHYQG
ETSACVRERITEAYRHQNARQKQLNAHLNNQAIRRFCSLLPEDAQWLEEALTRLELSVRAWQRLLRVARTIADLEHQPQI
QRQHLQEALSYRAIDRLLIHLRKMVA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=364321 FEM41_RS06495 WP_138095211.1 1410746..1412266(-) (comM) [Jejubacter calystegiae strain KSNA2]
ATGACACTGTCTATTATTCATACACGCGCCGCACTGGGCATTACTGCTCCCCAGGTGACCGTCGAAGCACATATCAGCCA
GGGACTGCCGGGGCTCACCATGGTTGGCTTACCCGAAACTACCGTAAAAGAGGCCCGGGATCGGGTACGCAGCGCCATTA
TTAATAGCGGATATCAATTTCCAGCCCGTAAGATCACCCTGAATCTGGCTCCGGCAGACCTGCCTAAGGAAGGGGGGCGG
TTCGATCTTCCCATTGCTCTGGCGCTCCTGGCGGCCTCGGAGCAACTTTGTATCCGCCATCCTGAACGCTACGAGTTTCT
GGGCGAACTGGCGCTTACCGGCGCGCTGAGGGGCGTTCCCGGCGCGATATCTGGCGCAATGGAGGGATTGCGCGCCGGCC
GACAGGTGATCGTCGCGGCAGAGAATGAAGACGAGGTGGGTTTGATTGGGAAGCCGGGCTGTTTTATCGCCCATCAGTTG
GCCGATGTCTGCGCCTTTCTGGAAGGTAAAACAATACTGCCAGAGCCCAGGGCCCCTCATCTCCCCCATATCAATGAACA
CCGGGATCTGTGCGATATTATTGGTCAGAGTCAAGGTAAGCGTGCCCTGGAAATCGCAGCTGCCGGGGGACATAATCTGC
TATTACTCGGCCCTCCAGGCACCGGAAAAACAATGCTGGCAAGCCGGTTACCGGGACTGTTACCACCGCTGAGTAATACT
GAGGCCCTGGAAAGTGCGGCAATACTGAGTCTGGTTAGCCCTCATAGCCTTCATCAACAATGGAGACAGCGTCCCTTTCG
CGCCCCACATCACAGCGCATCGATGACGGCGCTGGTTGGCGGAGGCTCCATGCCCGGCCCCGGAGAGATCTCCCTGGCGC
ATAACGGCATTCTGTTTCTTGACGAACTGCCGGAATTTAGTCGAAGGGTACTGGAAGCTTTACGCGAACCTATAGAGTCT
GGCGAGATCATCATCTCACGCACCCGAGCGAAAGTTCGCTATCCGGCCCGCTTTCAGCTGATCGCCGCAATGAACCCCAG
CCCTTCGGGTGACTGGCAGGGAAATCAAAGCCACGGAGGATTGCAGCAAACGTTACGCTATATTAACCGGCTCTCCGGCC
CCTTCCTGGATCGTTTCGATATGTCACTGGAAATTCCGCTTCTGCCGCCTGGCACTCTGTCAGGCCAACATTATCAAGGG
GAGACCAGCGCTTGCGTACGTGAACGCATCACAGAGGCTTACAGGCACCAGAACGCACGTCAAAAACAATTAAACGCGCA
TCTGAATAATCAGGCGATACGTCGCTTTTGCTCGCTGTTGCCAGAAGATGCCCAATGGCTGGAAGAGGCACTCACCCGCC
TGGAACTGTCTGTTCGGGCGTGGCAGCGTCTGCTCAGGGTTGCCAGAACGATTGCCGATTTGGAACATCAGCCACAAATC
CAACGCCAGCACCTGCAGGAAGCGTTGAGTTATCGGGCTATCGATCGCTTACTTATTCATCTACGCAAAATGGTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1G7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Haemophilus influenzae Rd KW20

57.059

100

0.575
  comM Legionella pneumophila str. Paris

49.701

99.012

0.492
  comM Legionella pneumophila strain ERS1305867

49.701

99.012

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

100

0.429

Multiple sequence alignment