Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TK90_RS00715 Genome accession   NC_013889
Coordinates   155237..156742 (-) Length   501 a.a.
NCBI ID   WP_012981565.1    Uniprot ID   D3SCE7
Organism   Thioalkalivibrio sp. K90mix     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 150237..161742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK90_RS00695 (TK90_0145) - 151223..151918 (+) 696 WP_012981560.1 4Fe-4S dicluster domain-containing protein -
  TK90_RS00700 (TK90_0146) - 151944..152993 (+) 1050 WP_012981561.1 DmsC/YnfH family molybdoenzyme membrane anchor subunit -
  TK90_RS15445 (TK90_0147) - 153127..153261 (-) 135 WP_012981562.1 hypothetical protein -
  TK90_RS00710 (TK90_0149) - 154309..155172 (+) 864 WP_012981564.1 c-type cytochrome -
  TK90_RS00715 (TK90_0150) comM 155237..156742 (-) 1506 WP_012981565.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TK90_RS00720 (TK90_0151) - 156802..157056 (-) 255 WP_012981566.1 accessory factor UbiK family protein -
  TK90_RS00725 (TK90_0152) - 157115..157837 (-) 723 WP_018138211.1 pteridine reductase -
  TK90_RS00730 (TK90_0153) - 157971..159104 (+) 1134 WP_020146047.1 class I SAM-dependent methyltransferase -
  TK90_RS00735 (TK90_0154) tsaD 159175..160185 (+) 1011 WP_012981569.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  TK90_RS00740 (TK90_0155) plsY 160195..160821 (-) 627 WP_012981570.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  TK90_RS00745 (TK90_0156) - 160927..161673 (+) 747 WP_012981571.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53916.18 Da        Isoelectric Point: 6.8173

>NTDB_id=36408 TK90_RS00715 WP_012981565.1 155237..156742(-) (comM) [Thioalkalivibrio sp. K90mix]
MPIAISHARAVAGIQAPLVTIETHLANGLPSFQIVGLPEAAVRESRDRVRAAIQTSGFDFPRRRITVNLAPADLPKDGGR
FDLGIALGILAASQQIPGSALEGREFLGELGLDGTLRPVGGTLAAALAAANEARELIVNPEDGAEAALASAARVRTADHL
IAVCAGLQGQGELDEGRPVEAEPDRYPDLADVRGQHQARRALEIAAAGGHHLLMVGPPGSGKSMLAARIPGILPPMSEAE
ALETAAIHSLRDTGHLQRDWRARPFRSPHHTASGVALVGGGSTPRPGEISLAHHGVLFLDELTEFQRSVLDVLREPLETG
TIHIARAARQAEFPARFQLVAAMNPCPQGFDCDLGARCQCSPEQMARHRRRLSAPLLDRIDLAIEVPRIPPPELASHGEP
GEDSRTVAQRVALAQERQRQRQGSLNRELAGQMLDQHATLEAGDRALLDRAAERFRLSARAYHRILRLARTIADLEPSDP
ITTGHLTEALSYRALDHWRTQ

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=36408 TK90_RS00715 WP_012981565.1 155237..156742(-) (comM) [Thioalkalivibrio sp. K90mix]
ATGCCCATTGCCATCAGCCATGCCCGTGCGGTCGCCGGGATCCAGGCACCGCTGGTCACCATCGAGACTCACCTGGCCAA
CGGCCTGCCGTCATTCCAGATTGTCGGCCTGCCGGAGGCGGCCGTGCGCGAGAGCCGCGACCGCGTCCGCGCGGCCATCC
AGACCAGCGGCTTCGACTTTCCCCGCCGCCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCGAAGGATGGCGGGCGT
TTCGACCTCGGCATCGCATTGGGCATCCTCGCCGCCAGCCAGCAGATCCCGGGCAGCGCCCTCGAAGGGCGCGAGTTTCT
GGGCGAACTGGGACTGGACGGGACCCTGCGACCGGTCGGCGGGACGCTGGCCGCCGCACTGGCAGCCGCTAATGAGGCGC
GCGAGCTGATCGTGAACCCCGAGGACGGGGCCGAGGCGGCACTGGCCAGCGCCGCGCGGGTGCGCACCGCCGACCACCTG
ATCGCGGTCTGCGCCGGGCTGCAGGGTCAAGGGGAGCTGGACGAGGGCCGACCCGTCGAAGCGGAACCGGATCGCTACCC
CGACCTGGCCGATGTGCGCGGTCAGCACCAGGCACGTCGCGCACTGGAGATCGCGGCCGCGGGTGGCCACCACCTGTTAA
TGGTCGGCCCGCCCGGCAGCGGCAAGTCCATGCTGGCCGCACGCATACCGGGCATCCTGCCACCGATGTCCGAGGCGGAA
GCACTGGAGACCGCCGCGATCCACAGTCTGCGCGACACCGGCCACCTGCAGCGCGACTGGCGCGCCCGACCGTTCCGCTC
GCCCCACCACACGGCCTCGGGGGTCGCACTGGTCGGTGGTGGCTCCACACCACGCCCGGGCGAGATCTCGCTGGCGCATC
ACGGCGTGCTGTTTCTGGACGAGCTGACCGAATTCCAGCGCAGTGTGCTCGATGTCCTGCGCGAGCCGCTTGAGACCGGG
ACGATTCATATCGCCCGAGCCGCCCGGCAGGCCGAGTTTCCCGCCCGGTTCCAGCTGGTAGCGGCGATGAACCCCTGTCC
ACAGGGCTTCGACTGCGACCTCGGGGCGCGCTGCCAGTGCTCCCCGGAACAGATGGCGCGCCACCGGCGACGCCTGTCCG
CGCCGCTACTGGACCGCATCGACCTGGCGATCGAGGTCCCGCGCATCCCGCCGCCCGAACTGGCCTCGCATGGCGAACCC
GGCGAAGACTCCAGGACCGTCGCGCAACGCGTCGCCCTGGCGCAGGAACGCCAACGGCAACGCCAGGGCTCCCTCAATCG
CGAACTGGCGGGCCAGATGCTGGACCAGCACGCCACCCTGGAGGCAGGCGATCGCGCCCTGCTGGACCGCGCTGCGGAGC
GCTTTCGCCTGTCGGCACGCGCCTACCACCGCATCCTGCGCCTCGCGCGGACGATCGCCGACCTCGAACCCAGCGACCCG
ATCACGACCGGTCACCTGACCGAGGCGCTCAGCTATCGCGCGCTGGATCACTGGCGCACCCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3SCE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.479

100

0.537
  comM Vibrio campbellii strain DS40M4

51.889

100

0.521
  comM Haemophilus influenzae Rd KW20

50.898

100

0.509
  comM Glaesserella parasuis strain SC1401

50

100

0.501
  comM Legionella pneumophila str. Paris

49.9

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.451

Multiple sequence alignment