Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E6C60_RS20650 Genome accession   NZ_CP040396
Coordinates   4453979..4454467 (-) Length   162 a.a.
NCBI ID   WP_138227528.1    Uniprot ID   -
Organism   Paenibacillus algicola strain HB172198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4448979..4459467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6C60_RS20630 (E6C60_4183) - 4449140..4450102 (-) 963 WP_138227524.1 ABC transporter permease -
  E6C60_RS20635 (E6C60_4184) - 4450174..4451934 (-) 1761 WP_138227525.1 ABC transporter substrate-binding protein -
  E6C60_RS20640 (E6C60_4185) - 4452529..4453209 (-) 681 WP_138227526.1 SOS response-associated peptidase -
  E6C60_RS20645 (E6C60_4186) rpsR 4453686..4453958 (-) 273 WP_138227527.1 30S ribosomal protein S18 -
  E6C60_RS20650 (E6C60_4187) ssbA 4453979..4454467 (-) 489 WP_138227528.1 single-stranded DNA-binding protein Machinery gene
  E6C60_RS20655 (E6C60_4188) rpsF 4454511..4454795 (-) 285 WP_138227529.1 30S ribosomal protein S6 -
  E6C60_RS20660 (E6C60_4190) - 4455076..4455273 (+) 198 WP_397333208.1 YjzC family protein -
  E6C60_RS20665 (E6C60_4191) - 4455924..4457147 (-) 1224 WP_138227530.1 S-layer homology domain-containing protein -
  E6C60_RS20675 (E6C60_4192) - 4457903..4458121 (-) 219 WP_138227531.1 DUF951 domain-containing protein -
  E6C60_RS20680 (E6C60_4193) - 4458198..4459079 (-) 882 WP_138227532.1 mechanosensitive ion channel family protein -
  E6C60_RS20685 (E6C60_4194) - 4459109..4459357 (-) 249 WP_138227533.1 DUF3343 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17879.58 Da        Isoelectric Point: 4.8453

>NTDB_id=363922 E6C60_RS20650 WP_138227528.1 4453979..4454467(-) (ssbA) [Paenibacillus algicola strain HB172198]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRDSGGGSGQREESTYNGGSSNSGGNRGNSGGYSRNNQDPFSDEGKPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=363922 E6C60_RS20650 WP_138227528.1 4453979..4454467(-) (ssbA) [Paenibacillus algicola strain HB172198]
TTGTTGAACCGTGTCATTTTGATCGGCCGGCTAACCCGGGATCCTGAGCTGCGTTATACACCAGCAGGGGTTGCGGTCAC
TCAGTTTACGCTTGCCGTAGACCGTCCGTTTACTGGACAAGGCGGGGAACGCGAAGCGGATTTCATCCCGGTAGTAACCT
GGAGACAGCTCGCGGAAACCTGTGCGAACTATCTGCGTAAAGGCCGTCTGACGGCTGTAGAAGGACGCATTCAAGTACGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTGACTGAAGTTATTGCAGATAATGTCCGTTTCTTGGAATCGAACCG
TGACAGCGGCGGAGGCAGCGGACAACGTGAGGAATCCACGTACAACGGAGGAAGCAGCAATAGCGGCGGAAACCGGGGGA
ACAGTGGAGGTTACTCGCGCAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGATGATTTG
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.537
  ssb Neisseria meningitidis MC58

34.857

100

0.377
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

64.198

0.37

Multiple sequence alignment