Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEI17_RS25090 Genome accession   NZ_CP040392
Coordinates   5290521..5291045 (-) Length   174 a.a.
NCBI ID   WP_043955685.1    Uniprot ID   -
Organism   Kosakonia radicincitans strain DSM 107547     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5285521..5296045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEI17_RS25065 (FEI17_25055) - 5286388..5287152 (-) 765 WP_007372447.1 IclR family transcriptional regulator -
  FEI17_RS25070 (FEI17_25060) - 5287529..5288224 (+) 696 WP_007372446.1 amino acid ABC transporter permease -
  FEI17_RS25075 (FEI17_25065) - 5288202..5288969 (+) 768 WP_007372445.1 amino acid ABC transporter ATP-binding protein -
  FEI17_RS25080 (FEI17_25070) - 5288994..5289767 (+) 774 WP_007372444.1 amino acid ABC transporter substrate-binding protein -
  FEI17_RS25085 (FEI17_25075) - 5289921..5290460 (+) 540 WP_083565939.1 chorismate mutase -
  FEI17_RS25090 (FEI17_25080) ssb 5290521..5291045 (-) 525 WP_043955685.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FEI17_RS25095 (FEI17_25085) uvrA 5291310..5294135 (+) 2826 WP_149289280.1 excinuclease ABC subunit UvrA -
  FEI17_RS25100 (FEI17_25090) - 5294139..5294507 (-) 369 WP_007372440.1 MmcQ/YjbR family DNA-binding protein -
  FEI17_RS25105 (FEI17_25095) - 5294510..5294926 (-) 417 WP_007372439.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FEI17_RS25110 (FEI17_25100) aphA 5294996..5295706 (-) 711 WP_007372438.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18666.66 Da        Isoelectric Point: 5.2456

>NTDB_id=363894 FEI17_RS25090 WP_043955685.1 5290521..5291045(-) (ssb) [Kosakonia radicincitans strain DSM 107547]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=363894 FEI17_RS25090 WP_043955685.1 5290521..5291045(-) (ssb) [Kosakonia radicincitans strain DSM 107547]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGTGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCTTCCGCTCCGGCACCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.379

Multiple sequence alignment