Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEF07_RS23855 Genome accession   NZ_CP040350
Coordinates   5005125..5005655 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain 1912768R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5000125..5010655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF07_RS23840 (FEF07_23915) maa 5000148..5000705 (+) 558 WP_021505134.1 maltose O-acetyltransferase -
  FEF07_RS23845 (FEF07_23920) - 5000737..5001789 (-) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  FEF07_RS23850 (FEF07_23925) uvrA 5002019..5004847 (-) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  FEF07_RS23855 (FEF07_23935) ssb 5005125..5005655 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FEF07_RS23860 (FEF07_23940) - 5005741..5006697 (-) 957 WP_015379212.1 cyclase family protein -
  FEF07_RS23865 (FEF07_23945) - 5006917..5007129 (-) 213 WP_004936800.1 DUF1471 domain-containing protein -
  FEF07_RS23870 (FEF07_23950) - 5007363..5008112 (-) 750 WP_088381956.1 3-oxoacyl-ACP reductase family protein -
  FEF07_RS23875 (FEF07_23955) - 5008240..5009157 (+) 918 WP_075684486.1 LysR family transcriptional regulator -
  FEF07_RS23880 (FEF07_23960) - 5009213..5009473 (-) 261 WP_004936809.1 YdgH/BhsA/McbA-like domain containing protein -
  FEF07_RS23885 (FEF07_23965) - 5009669..5010112 (+) 444 WP_015379208.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=363593 FEF07_RS23855 WP_004936793.1 5005125..5005655(+) (ssb) [Serratia marcescens strain 1912768R]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=363593 FEF07_RS23855 WP_004936793.1 5005125..5005655(+) (ssb) [Serratia marcescens strain 1912768R]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGTGGCCAGGGCGGTTGGG
GCCAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment