Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SMI_RS10530 Genome accession   NC_013853
Coordinates   2145641..2146399 (+) Length   252 a.a.
NCBI ID   WP_000410369.1    Uniprot ID   D3HBS2
Organism   Streptococcus mitis B6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2140641..2151399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS10500 (smi_2083) comE 2141248..2142000 (-) 753 WP_000866062.1 competence system response regulator transcription factor ComE Regulator
  SMI_RS10505 (smi_2084) comD/comD1 2141997..2143322 (-) 1326 WP_012972628.1 competence system sensor histidine kinase ComD Regulator
  SMI_RS10510 (smi_2085) comC/comC2 2143335..2143457 (-) 123 WP_000799698.1 competence-stimulating peptide ComC Regulator
  SMI_RS10520 (smi_2087) rlmH 2143739..2144218 (-) 480 WP_000695939.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SMI_RS10525 (smi_2088) htrA 2144402..2145583 (+) 1182 WP_000681606.1 S1C family serine protease Regulator
  SMI_RS10530 (smi_2089) spo0J 2145641..2146399 (+) 759 WP_000410369.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29017.35 Da        Isoelectric Point: 7.3991

>NTDB_id=36354 SMI_RS10530 WP_000410369.1 2145641..2146399(+) (spo0J) [Streptococcus mitis B6]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNQEQQDYFFQRIIEENISVRKLEALLTEKKQKKLQKTNHFIQNEEEQLKKLLGLDVEIKLSKKDSGKIIIAFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=36354 SMI_RS10530 WP_000410369.1 2145641..2146399(+) (spo0J) [Streptococcus mitis B6]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAAGGTCTATCCCAGCTGTTGTTAAACAA
CTTTCAGATCAAGAAATGATGGTCCAGTCCATCATTGAAAATTTGCAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCTATTCGCTTGCTTTCCTTGCCAGAACAGATCCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCGCATGCT
CGTTCGCTAGTTGGGTTGAATCAGGAACAACAAGACTATTTCTTTCAACGAATCATAGAGGAAAACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACTTCAAAAAACGAATCATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATCAAATTGTCTAAAAAAGATAGTGGCAAAATCATTATTGCTTTCTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HBS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.407

100

0.496

Multiple sequence alignment