Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SMI_RS08925 Genome accession   NC_013853
Coordinates   1812528..1814507 (-) Length   659 a.a.
NCBI ID   WP_000857578.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807528..1819507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08905 (smi_1754) gpsB 1808608..1808949 (-) 342 WP_000094897.1 cell division regulator GpsB -
  SMI_RS08910 (smi_1755) - 1809019..1809546 (-) 528 WP_000205317.1 DUF1273 domain-containing protein -
  SMI_RS08915 (smi_1756) recU 1809613..1810209 (+) 597 WP_000248753.1 Holliday junction resolvase RecU -
  SMI_RS08920 (smi_1757) pbp1a 1810206..1812386 (+) 2181 WP_001041854.1 penicillin-binding protein PBP1A -
  SMI_RS08925 (smi_1758) amiA 1812528..1814507 (-) 1980 WP_000857578.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS08930 (smi_1759) glf 1814847..1815947 (-) 1101 WP_000272526.1 UDP-galactopyranose mutase -
  SMI_RS08935 (smi_1760) amiA3 1816279..1817886 (-) 1608 WP_231840208.1 ABC transporter substrate-binding protein Regulator
  SMI_RS10955 amiA 1817914..1818045 (-) 132 WP_269446519.1 ABC transporter substrate-binding protein Regulator
  SMI_RS10870 - 1818094..1818237 (-) 144 WP_001093125.1 hypothetical protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72851.45 Da        Isoelectric Point: 4.7835

>NTDB_id=36334 SMI_RS08925 WP_000857578.1 1812528..1814507(-) (amiA) [Streptococcus mitis B6]
MKTRKVLALAGVTLLAAGVLAACSGGAGAKGEQTFAFTYETEPDNLNYLTTGKAATANITSNVIDGLLENDRYGNLIPSM
AEDWSVSKDGLTYTYKIRKDAKWYTSEGEEYAPVKAQDFVTGLQYATDKKSEALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKAGDPSSILYNGPFVLKSLVAKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKNGSLTVARLSPTNASFAELEKTMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
FADAQDGLYNPNKAKAEFAKAKTALQAEGVTFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGTDNVVIDIQQLQKDEVN
NITYFAETAAGEDWDISDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGKDNVAAKKVGLYDYEKLVTEADDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTVDEYQKAQDKWM
KEKEESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=36334 SMI_RS08925 WP_000857578.1 1812528..1814507(-) (amiA) [Streptococcus mitis B6]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTGACTTTATTAGCAGCGGGTGTTTTAGCTGCTTGTTCAGGGGGGGC
AGGTGCTAAAGGTGAGCAGACCTTTGCCTTTACTTATGAGACTGAACCAGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCGACTGCCAATATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGCTATGGGAATTTGATTCCCTCTATG
GCAGAGGACTGGTCTGTTTCTAAGGATGGTTTGACTTATACCTATAAAATTCGTAAAGACGCCAAGTGGTACACGTCTGA
GGGAGAAGAGTATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGACTTCAATATGCGACAGATAAGAAATCTGAAGCTC
TTTACTTGGTACAGGATTCAATCAAAGGTTTGGATGCATACGCTAAAGGGGAAAATAAAGATTTCTCTCAAGTTGGGATT
AAAGCTCTGGATGACCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTAAACTCAAAAGGGGATGATTTTGCCAAGGCTGGGGATCCAAGCAGTATTCTCT
ACAATGGACCTTTCGTTTTGAAATCTCTAGTAGCGAAATCATCTGTAGAGTTTGCGAAAAATCCTAATTACTGGGATAAG
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAGAATTTTAAAAA
TGGTAGTCTTACAGTAGCTCGTCTCTCTCCTACAAATGCAAGTTTTGCAGAGCTTGAAAAAACGATGAAAGACAATATTG
TCTATACCCAACAAGACTCGACTACGTATCTAGTGGGAACAAATATTGATCGTCAGTCTTATAAATATACTTCTAAGACT
AGCGACGAACAAAAGACTTCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACGGCCTATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATCTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCAGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTGGTAACTTATGGGGATGAATGGAAGGATGTCAAC
TTCGCAGATGCTCAAGATGGTCTCTACAATCCAAACAAGGCTAAGGCTGAATTTGCTAAGGCTAAGACTGCTCTTCAGGC
AGAAGGCGTGACTTTCCCAATTCATTTGGATATGCCAGTTGATCAGACAGCAACTACAAAAGTTCAACGTGTCCAATCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTACAGATAATGTTGTCATTGATATTCAACAGCTACAAAAGGATGAAGTAAAC
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATCATCAAACCATCAGTTGGTGAAAGCACTAAAACATATTTAGGATTTGACTCAGGGA
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAGAAATTGGTTACTGAAGCTGATGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATCCCAACAACATCACT
CACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCATTTGCCTTCTCTGGTAACAAGGGGACAAGCGATC
CGCTCCTATACAAATACTTGGAACTTCAAGACAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGAACTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.03

100

0.581
  amiA3 Streptococcus thermophilus LMD-9

57.727

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

57.424

100

0.575

Multiple sequence alignment