Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SMI_RS08935 Genome accession   NC_013853
Coordinates   1816279..1817886 (-) Length   535 a.a.
NCBI ID   WP_231840208.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811279..1822886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS08925 (smi_1758) amiA 1812528..1814507 (-) 1980 WP_000857578.1 peptide ABC transporter substrate-binding protein Regulator
  SMI_RS08930 (smi_1759) glf 1814847..1815947 (-) 1101 WP_000272526.1 UDP-galactopyranose mutase -
  SMI_RS08935 (smi_1760) amiA3 1816279..1817886 (-) 1608 WP_231840208.1 ABC transporter substrate-binding protein Regulator
  SMI_RS10955 amiA 1817914..1818045 (-) 132 WP_269446519.1 ABC transporter substrate-binding protein Regulator
  SMI_RS10870 - 1818094..1818237 (-) 144 WP_001093125.1 hypothetical protein -
  SMI_RS08940 (smi_1761) - 1818433..1820040 (-) 1608 WP_001156813.1 glycoside hydrolase family 13 protein -
  SMI_RS08945 (smi_1762) - 1820193..1821677 (+) 1485 WP_000743581.1 DUF1846 domain-containing protein -
  SMI_RS08950 (smi_1763) - 1821772..1822254 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 60000.81 Da        Isoelectric Point: 5.1133

>NTDB_id=36335 SMI_RS08935 WP_231840208.1 1816279..1817886(-) (amiA3) [Streptococcus mitis B6]
MIGIKYAVDNKSQVIDLIQNSIKGLNDYITGADSDFSKVGVKVIDDQTVEYTLALPEPYWNSKTTNSILFPVNEEFLNSK
GEDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHHYDHDKVSIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSS
NFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRQAYNHTTKTTDEQKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAA
SKTLRNTLVPPTFVQVGDKNFGEVVASKLVNYGTEWSGINLADAQDAYFNKEKAQEKFAEAKKDLASQGVTFPIHLDIAV
DQTNKNAVTGMNSVKQTLESVLGADNLVIDVQQLSTDEYNNVAFLAPTPNARDYDLSFDGWVADYQDPSTYLNPFNAEDG
FYLKIFGLDAKEDKAKIASLGLDTYTKMLKDADSENKDVAKRYEKYAEAQAWMIDYSLIMSAMSSGGTASVTKVTPFTRG
YSLVGIKGDGNNYKYMKLQKDTVTTKQFEEAKTKWKQESKKTIEKAQKEAENHVK

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=36335 SMI_RS08935 WP_231840208.1 1816279..1817886(-) (amiA3) [Streptococcus mitis B6]
GTGATAGGTATCAAGTACGCAGTGGACAATAAATCACAGGTCATTGACTTGATTCAAAACTCGATTAAGGGCTTGAATGA
CTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGTCATTGACGACCAGACTGTTGAGTATACTTTGG
CACTTCCAGAGCCTTACTGGAATTCAAAAACAACGAATAGTATTCTTTTCCCAGTGAATGAAGAGTTTCTAAACTCAAAA
GGGGAAGATTTTGGTACCCTATCTCCAGATAGCATTCTCTACAGCGGACCTTATTTGTTAAAAGATTTCACATCAAAATC
ATCAATCGAGTATGTGAAAAATCCGCATCACTATGATCATGACAAAGTATCAATTGAACACGTAAAATTGGCTTACTTTG
ATGGCTCAGACCAAGAATTGACCATCCGTAATTTTGAAAGTGGAGCTTATTCTATCGCTGGGGTTTATCCAAATAGTTCA
AACTTTGCTAAGACCAAGGAGAAATACAAGGATAATATCGTCTATAGCTTGCAGGACAAGACTTCTTGGTATTTTAATTT
CAACGTCAACCGTCAGGCTTACAATCACACTACTAAAACGACAGATGAGCAGAAGAAGTCAACTGAGACAGCTGTCTTGA
ACAAAAACTTCCGCCAAGCGGTGAACTTTGCCTTGGACCGCACAGCCTATTCTGCTCAGTCAAACGGTGAAGAAGCAGCT
AGCAAGACCCTTCGTAACACTCTAGTACCTCCTACATTTGTCCAAGTTGGAGACAAGAACTTTGGAGAAGTAGTCGCTTC
TAAATTGGTCAACTATGGCACAGAATGGTCAGGTATTAACTTGGCAGATGCGCAGGATGCCTATTTCAACAAAGAAAAAG
CCCAAGAAAAATTTGCAGAAGCCAAAAAAGACTTGGCAAGTCAAGGTGTGACCTTCCCAATTCACTTGGATATAGCTGTT
GATCAGACAAATAAAAATGCTGTAACTGGTATGAATTCTGTGAAACAGACCCTTGAGTCTGTTTTAGGTGCTGACAATCT
TGTTATTGATGTTCAGCAACTCTCTACAGATGAGTACAATAATGTAGCCTTCTTGGCTCCTACTCCCAATGCAAGAGATT
ATGATTTAAGTTTTGATGGTTGGGTAGCGGATTATCAGGATCCATCTACTTACCTTAATCCTTTCAATGCAGAGGATGGA
TTCTATCTCAAGATTTTTGGTCTAGATGCCAAGGAAGATAAAGCTAAGATTGCTAGCTTGGGGCTTGATACCTACACTAA
GATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGCTATGAAAAATATGCTGAAGCACAGGCTTGGATGA
TTGACTATTCTCTGATTATGTCAGCCATGTCAAGCGGTGGCACAGCATCTGTAACCAAAGTAACGCCATTTACAAGAGGC
TATTCATTGGTCGGTATCAAGGGTGATGGCAATAACTACAAGTACATGAAACTGCAAAAAGACACTGTGACAACCAAACA
GTTTGAAGAAGCGAAGACCAAATGGAAGCAAGAAAGTAAAAAAACAATCGAAAAAGCTCAAAAAGAAGCAGAAAATCATG
TTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(34-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

49.351

100

0.497
  amiA Streptococcus salivarius strain HSISS4

48.98

100

0.493
  amiA3 Streptococcus thermophilus LMG 18311

48.794

100

0.492

Multiple sequence alignment