Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FD725_RS00130 Genome accession   NZ_CP040297
Coordinates   26884..27249 (+) Length   121 a.a.
NCBI ID   WP_015139860.1    Uniprot ID   K9QWI0
Organism   Nostoc sp. TCL26-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 21884..32249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD725_RS00115 (FD725_00120) - 22365..23228 (+) 864 WP_179046253.1 DUF6671 family protein -
  FD725_RS00120 (FD725_00125) hmpF 23248..24999 (-) 1752 WP_179046254.1 pilus motility taxis protein HmpF -
  FD725_RS00125 (FD725_00130) - 25397..26548 (+) 1152 WP_179046255.1 response regulator -
  FD725_RS00130 (FD725_00135) pilH 26884..27249 (+) 366 WP_015139860.1 response regulator transcription factor Machinery gene
  FD725_RS00135 (FD725_00140) - 27263..27793 (+) 531 WP_179046256.1 chemotaxis protein CheW -
  FD725_RS00140 (FD725_00145) - 27811..30702 (+) 2892 WP_179046257.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13396.51 Da        Isoelectric Point: 4.6926

>NTDB_id=363027 FD725_RS00130 WP_015139860.1 26884..27249(+) (pilH) [Nostoc sp. TCL26-01]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIQTEPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=363027 FD725_RS00130 WP_015139860.1 26884..27249(+) (pilH) [Nostoc sp. TCL26-01]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTTGCACAAAGGGAGATGATCACAGACCTCCTGAAAGCCAGTGGCCTAAC
AGTCACCCATGCCACCGACGGATTAGAAGCACTAGAGGCCATACAAACCGAACCCCCCGACTTAGTGGTTTTGGATATTG
TCATGCCCCGCATGAACGGTTATGAAGTTTGCCGTCGATTAAAATCCGACCCCAAAACCCAAAATGTTCCCGTAGTCATG
TGTTCTTCCAAAGGTGAAGAATTTGACCGCTACTGGGGCATGAAACAAGGTGCGGATGCTTACATAGCTAAACCGTTTCA
ACCAACCGAATTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9QWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment