Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FD724_RS13415 Genome accession   NZ_CP040281
Coordinates   3096209..3096574 (-) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc sp. C057     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3091209..3101574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD724_RS13405 (FD724_13475) - 3092720..3095650 (-) 2931 WP_179072971.1 methyl-accepting chemotaxis protein -
  FD724_RS13410 (FD724_13480) - 3095665..3096195 (-) 531 WP_163927234.1 chemotaxis protein CheW -
  FD724_RS13415 (FD724_13485) pilH 3096209..3096574 (-) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  FD724_RS13420 (FD724_13490) - 3096788..3097984 (-) 1197 WP_179072972.1 response regulator -
  FD724_RS13425 (FD724_13495) hmpF 3098394..3100154 (+) 1761 WP_179072973.1 pilus motility taxis protein HmpF -
  FD724_RS13430 (FD724_13500) tilS 3100283..3101278 (-) 996 WP_179072974.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=363017 FD724_RS13415 WP_069073698.1 3096209..3096574(-) (pilH) [Nostoc sp. C057]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=363017 FD724_RS13415 WP_069073698.1 3096209..3096574(-) (pilH) [Nostoc sp. C057]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTAAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGCGATGGATTAGAAGCATTGGAGGCAATCCAAATAGCACCTCCCGATTTAGTGGTGTTAGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCCAAAACCCAAAATGTCCCGGTGGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGTATGAAGCAGGGTGCAGATGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment