Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FDZ90_RS05615 | Genome accession | NZ_CP040172 |
| Coordinates | 1015609..1015920 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain VC1374 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010609..1020920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS05600 (FDZ90_05765) | lon | 1010646..1013006 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| FDZ90_RS05605 (FDZ90_05770) | - | 1013190..1013462 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| FDZ90_RS05610 (FDZ90_05775) | ppiD | 1013615..1015474 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| FDZ90_RS05615 (FDZ90_05780) | comEA | 1015609..1015920 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| FDZ90_RS05620 (FDZ90_05785) | cmk | 1016103..1016780 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| FDZ90_RS05625 (FDZ90_05790) | rpsA | 1016889..1018559 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| FDZ90_RS05630 (FDZ90_05795) | ihfB | 1018847..1019125 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| FDZ90_RS05635 (FDZ90_05800) | - | 1019264..1019545 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| FDZ90_RS05640 (FDZ90_05805) | lapB | 1019557..1020726 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=362443 FDZ90_RS05615 WP_001166105.1 1015609..1015920(+) (comEA) [Vibrio cholerae strain VC1374]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=362443 FDZ90_RS05615 WP_001166105.1 1015609..1015920(+) (comEA) [Vibrio cholerae strain VC1374]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |