Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FDQ49_RS11080 Genome accession   NZ_CP040105
Coordinates   2351299..2352039 (+) Length   246 a.a.
NCBI ID   WP_006581061.1    Uniprot ID   A0A8B4N9D4
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346299..2357039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11065 (FDQ49_11065) ponA 2346880..2349438 (-) 2559 WP_022576001.1 penicillin-binding protein PBP1a -
  FDQ49_RS11070 (FDQ49_11070) comM 2349600..2350658 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  FDQ49_RS11075 (FDQ49_11075) pilN 2350658..2351302 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  FDQ49_RS11080 (FDQ49_11080) pilO 2351299..2352039 (+) 741 WP_006581061.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDQ49_RS11085 (FDQ49_11085) pilP 2352050..2352577 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  FDQ49_RS11090 (FDQ49_11090) pilQ 2352640..2354805 (+) 2166 WP_006581062.1 type IV pilus secretin PilQ Machinery gene
  FDQ49_RS11095 (FDQ49_11095) aroK 2354817..2355386 (+) 570 WP_002051689.1 shikimate kinase AroK -
  FDQ49_RS11100 (FDQ49_11100) aroB 2355415..2356497 (+) 1083 WP_002051763.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27611.37 Da        Isoelectric Point: 4.9673

>NTDB_id=362235 FDQ49_RS11080 WP_006581061.1 2351299..2352039(+) (pilO) [Acinetobacter nosocomialis M2]
MSQDELQELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAQAKDSKSDIPVLNYSIKAKTYRYIGATEASAQPAKAAAATAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=362235 FDQ49_RS11080 WP_006581061.1 2351299..2352039(+) (pilO) [Acinetobacter nosocomialis M2]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCCAAATTACGTAACCTTCAGCAGTATCAAGTGCAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAGTTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATTCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATTTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCAAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCAACAGAGGCATCGGCACAACCAGCTAAGGCTGCAGCGGCGACTGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4N9D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.431

100

0.894
  comO Acinetobacter baylyi ADP1

70.954

97.967

0.695

Multiple sequence alignment