Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FDQ49_RS11075 Genome accession   NZ_CP040105
Coordinates   2350658..2351302 (+) Length   214 a.a.
NCBI ID   WP_004711656.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2345658..2356302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11055 (FDQ49_11055) - 2345703..2346035 (+) 333 WP_022576003.1 hypothetical protein -
  FDQ49_RS11060 (FDQ49_11060) - 2346038..2346862 (+) 825 WP_086373946.1 putative RNA methyltransferase -
  FDQ49_RS11065 (FDQ49_11065) ponA 2346880..2349438 (-) 2559 WP_022576001.1 penicillin-binding protein PBP1a -
  FDQ49_RS11070 (FDQ49_11070) comM 2349600..2350658 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  FDQ49_RS11075 (FDQ49_11075) pilN 2350658..2351302 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  FDQ49_RS11080 (FDQ49_11080) pilO 2351299..2352039 (+) 741 WP_006581061.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDQ49_RS11085 (FDQ49_11085) pilP 2352050..2352577 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  FDQ49_RS11090 (FDQ49_11090) pilQ 2352640..2354805 (+) 2166 WP_006581062.1 type IV pilus secretin PilQ Machinery gene
  FDQ49_RS11095 (FDQ49_11095) aroK 2354817..2355386 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24210.66 Da        Isoelectric Point: 6.9919

>NTDB_id=362234 FDQ49_RS11075 WP_004711656.1 2350658..2351302(+) (pilN) [Acinetobacter nosocomialis M2]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDAVKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=362234 FDQ49_RS11075 WP_004711656.1 2350658..2351302(+) (pilN) [Acinetobacter nosocomialis M2]
ATGGCAACAATTAACTTATTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTAGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGTTAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment