Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   FDQ49_RS11085 Genome accession   NZ_CP040105
Coordinates   2352050..2352577 (+) Length   175 a.a.
NCBI ID   WP_004711660.1    Uniprot ID   A0AB36M204
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2347050..2357577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11070 (FDQ49_11070) comM 2349600..2350658 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  FDQ49_RS11075 (FDQ49_11075) pilN 2350658..2351302 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  FDQ49_RS11080 (FDQ49_11080) pilO 2351299..2352039 (+) 741 WP_006581061.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDQ49_RS11085 (FDQ49_11085) pilP 2352050..2352577 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  FDQ49_RS11090 (FDQ49_11090) pilQ 2352640..2354805 (+) 2166 WP_006581062.1 type IV pilus secretin PilQ Machinery gene
  FDQ49_RS11095 (FDQ49_11095) aroK 2354817..2355386 (+) 570 WP_002051689.1 shikimate kinase AroK -
  FDQ49_RS11100 (FDQ49_11100) aroB 2355415..2356497 (+) 1083 WP_002051763.1 3-dehydroquinate synthase -
  FDQ49_RS11105 (FDQ49_11105) - 2356513..2357388 (+) 876 WP_022576000.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19413.63 Da        Isoelectric Point: 9.4011

>NTDB_id=362236 FDQ49_RS11085 WP_004711660.1 2352050..2352577(+) (pilP) [Acinetobacter nosocomialis M2]
MKIKQITLYILACAALVGCDSRIDAVNQQMASIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLENYALEALNMKGSMRNNRGQILALIQTPDHQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=362236 FDQ49_RS11085 WP_004711660.1 2352050..2352577(+) (pilP) [Acinetobacter nosocomialis M2]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCCTGTGCCGCTCTTGTGGGATGTGATTCAAGAATTGACGCAGTCAA
TCAGCAAATGGCAAGTATTCGTAATCAGCCACCGCTCCCTATTGAGCCAGCGCCGATTTTTACCCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCGTTTATGCCAAGCTCACTGGCAGCTGAACTTAAAATTATGGCCGGGAAGCGA
GTGTATCCAAATTTCTCACGTGCACCGCAACCATTAGAAAACTATGCACTTGAAGCCTTAAATATGAAAGGAAGCATGCG
TAATAATCGTGGTCAAATATTGGCTTTGATTCAGACACCGGATCATCAAATTGAACGGGTACAAGTGGGTAATTATATGG
GCATGAATCAAGGCCGTATTACTCATATTAGTCCAACCCAGATTGATCTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAGAGACCGAGAACTTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

96.571

100

0.966
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709

Multiple sequence alignment