Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FBB35_RS11095 Genome accession   NZ_CP040094
Coordinates   2633952..2634317 (-) Length   121 a.a.
NCBI ID   WP_012412195.1    Uniprot ID   A0A9Q5ZEW0
Organism   Nostoc sp. TCL240-02     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628952..2639317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBB35_RS11085 (FBB35_11080) - 2630460..2633411 (-) 2952 WP_254625910.1 methyl-accepting chemotaxis protein -
  FBB35_RS11090 (FBB35_11085) - 2633408..2633938 (-) 531 WP_012412196.1 chemotaxis protein CheW -
  FBB35_RS11095 (FBB35_11090) pilH 2633952..2634317 (-) 366 WP_012412195.1 response regulator transcription factor Machinery gene
  FBB35_RS11100 (FBB35_11095) - 2634531..2635727 (-) 1197 WP_174709674.1 response regulator -
  FBB35_RS11105 (FBB35_11100) hmpF 2636135..2637895 (+) 1761 WP_174709675.1 pilus motility taxis protein HmpF -
  FBB35_RS11110 (FBB35_11105) tilS 2637953..2638948 (-) 996 WP_174709676.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13336.50 Da        Isoelectric Point: 4.8604

>NTDB_id=362030 FBB35_RS11095 WP_012412195.1 2633952..2634317(-) (pilH) [Nostoc sp. TCL240-02]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=362030 FBB35_RS11095 WP_012412195.1 2633952..2634317(-) (pilH) [Nostoc sp. TCL240-02]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGCGATGGATTAGAAGCATTGGAAGCAATTCAAGTAGCACCTCCCGATTTAGTGGTATTAGATATTG
TCATGCCCCGAATGAACGGTTACGAAGTTTGTCGGCGGTTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGTTACTGGGGTATGAAGCAGGGTGCAGATGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment