Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GALLO_RS02770 Genome accession   NC_013798
Coordinates   527232..527894 (+) Length   220 a.a.
NCBI ID   WP_012961543.1    Uniprot ID   A0A139QVH3
Organism   Streptococcus gallolyticus UCN34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 522232..532894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS02745 (GALLO_0498) - 522435..523835 (+) 1401 WP_012961539.1 Cof-type HAD-IIB family hydrolase -
  GALLO_RS02750 (GALLO_0499) - 523835..524191 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  GALLO_RS02755 (GALLO_0500) cysK 524305..525234 (-) 930 WP_012961540.1 cysteine synthase A -
  GALLO_RS02760 (GALLO_0501) - 525338..525964 (-) 627 WP_012961541.1 YigZ family protein -
  GALLO_RS02765 (GALLO_0502) comFA/cflA 526021..527235 (+) 1215 WP_012961542.1 DEAD/DEAH box helicase Machinery gene
  GALLO_RS02770 (GALLO_0503) comFC/cflB 527232..527894 (+) 663 WP_012961543.1 ComF family protein Machinery gene
  GALLO_RS02775 (GALLO_0504) hpf 527970..528518 (+) 549 WP_012961544.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25606.64 Da        Isoelectric Point: 9.1814

>NTDB_id=36185 GALLO_RS02770 WP_012961543.1 527232..527894(+) (comFC/cflB) [Streptococcus gallolyticus UCN34]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKELKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=36185 GALLO_RS02770 WP_012961543.1 527232..527894(+) (comFC/cflB) [Streptococcus gallolyticus UCN34]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAGAAAGATGACAA
CGGCGTTTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCTAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATCCTTTTAAGTCACGTTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCTCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCTGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139QVH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.818

100

0.518
  comFC/cflB Streptococcus pneumoniae TIGR4

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae Rx1

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae D39

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae R6

51.364

100

0.514
  comFC/cflB Streptococcus mitis SK321

50.909

100

0.509

Multiple sequence alignment